I am an old R beginner, to day installed R 3.1.0 mavericks and am having troubles (the R -d lldb example below worked for me). Do you think we need simply wait for the packages actualization (like lsmeans, by example)? Could we do other actions? Thank you very much J Franco
Jorge Franco Director, Departamento de Biometria y EstadÃstica Facultad de Agronomia Universidad de la Republica Est. Exp. EEMAC, Ruta 3, Km 363 Paysandu Uruguay On 4/11/14, 4:28 PM, "Simon Urbanek" <[email protected]> wrote: >Patrick, > >could it be that you have older versions of packages installed that were >not built for Mavericks? Please check .libPaths() to make sure. > >I cannot reproduce the issue, so please provide the output of >sessionInfo() and if you have Xcode 5 installed, please run > >R -d lldb > >then let it crash and type >bt >on the prompt and send us the output. > >If you don't have Xcode5 or the above doesn't work, please select option >1 (abort) in the crash menu and check if you find a crash report. > >Thanks, >Simon > > >On Apr 11, 2014, at 2:58 PM, PatrickT <[email protected]> wrote: > >> First, sorry if this is a repeat: I just joined the list and don't know >> what has been discussed recently. Thanks for listening! >> >> I just installed the latest version of R (3.1.0). I also reinstalled >>the >> ggplot2 package. As soon as I execute library("ggplot2") I get the bomb >> message "R Session Aborted" (in RStudio) or "caught segfault" message >>(in >> the R Console). >> >> I'm on Mac OS X Mavericks. I downloaded the Mavericks version, which is >> specifically designed for the new XCode (or something). >> >> I haven't tried on my Linux because I want to keep at least one working >> version of R/RStudio. >> >> I tried to look at the log files here: >> Help Menu -> Diagnostics -> Show Log Files >> >> but they are from last week, which is odd because I use R/RStudio every >>day. >> >> In the R Console: >> library("ggplot2") >> >> *** caught segfault *** >> address 0x18, cause 'memory not mapped' >> >> Traceback: >> 1: dyn.load(file, DLLpath = DLLpath, ...) >> 2: library.dynam(lib, package, package.lib) >> 3: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = >> vI[[j]]) >> 4: asNamespace(ns) >> 5: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, >> .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package) >> 6: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) >> 7: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), >> versionCheck = vI[[i]]), from = package) >> 8: loadNamespace(package, c(which.lib.loc, lib.loc)) >> 9: doTryCatch(return(expr), name, parentenv, handler) >> 10: tryCatchOne(expr, names, parentenv, handlers[[1L]]) >> 11: tryCatchList(expr, classes, parentenv, handlers) >> 12: tryCatch(expr, error = function(e) { call <- conditionCall(e) >>if >> (!is.null(call)) { if (identical(call[[1L]], >> quote(doTryCatch))) call <- sys.call(-4L) dcall <- >> deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") >> LONG <- 75L msg <- conditionMessage(e) sm <- strsplit(msg, >> "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], >>type >> = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = >>"b") >> + nchar(sm[1L], type = "b") if (w > >> LONG) prefix <- paste0(prefix, "\n ") } else prefix >><- >> "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") >> .Internal(seterrmessage(msg[1L])) if (!silent && >> identical(getOption("show.error.messages"), TRUE)) { >> cat(msg, file = stderr()) .Internal(printDeferredWarnings()) } >> invisible(structure(msg, class = "try-error", condition = e))}) >> 13: try({ ns <- loadNamespace(package, c(which.lib.loc, lib.loc)) >>env >> <- attachNamespace(ns, pos = pos, deps)}) >> 14: library("ggplot2") >> >> Possible actions: >> 1: abort (with core dump, if enabled) >> 2: normal R exit >> 3: exit R without saving workspace >> 4: exit R saving workspace >> Selection: >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> R-SIG-Mac mailing list >> [email protected] >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> > >_______________________________________________ >R-SIG-Mac mailing list >[email protected] >https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
