On 21/04/2014 21:44, Allen Lin wrote:
Hi all,
I am new to this community so sorry if this question has already been
answered.
Yes, in the R-admin manual.
'The current CRAN ‘Mavericks’ distribution of R is built using
CC=clang
CXX=clang++
F77=gfortran-4.8
FC=$F77
OBJC=clang
with clang and clang++ from Xcode 5, and the Fortran compiler from
http://r.research.att.com/libs/gfortran-4.8.2-darwin13.tar.bz2.'
It seems you have not installed that Fortran compiler. (I am guessing:
you did not tell us how your R was built, or if a binary installation
from CRAN, which one.)
I was trying to build the spdep package from source. However, I encountered
error message like the following:
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined
dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib
-o spdep.so card.o dfs_ncomp.o dnn.o gabriel.o gearyw.o gsymtest.o init.o
insiders.o jc.o knn.o lagw.o listw2Matrix.o listw2sn.o ml_sse.o mom_calc.o
nbdists.o polypoly.o relative.o skater.o soigraph.o symtest.o
-L/Library/Frameworks/R.framework/Resources/lib -lRlapack
-L/Library/Frameworks/R.framework/Resources/lib -lRblas
-L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath
-lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
-Wl,CoreFoundation
ld: warning: directory not found for option
'-L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2'
ld: library not found for -lquadmath
clang: error: linker command failed with exit code 1 (use -v to see
invocation)
make: *** [spdep.so] Error 1
ERROR: compilation failed for package ‘spdep’
I checked my L/usr/local/lib/gcc/ directory, there is no folder, but there
are i686-apple-darwin8 powerpc-apple-darwin8. I suspect this is because on
the native gcc with Xcode command line tool is version 4.2. But when I run
gcc -v it shows:
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr
--with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
Target: x86_64-apple-darwin13.1.0
Thread model: posix
How could I point it to the correct directory?
Any thoughts will be greatly appreciated! I am totally lost..
Thanks,
Allen
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Brian D. Ripley, [email protected]
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
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