Dear Prof. Ripley, Thanks for your help. Yes, I will check the manual for the building parameters. For the Fortran compile, I am using gfortran-4.2.3.pkg<http://cran.r-project.org/bin/macosx/tools/gfortran-4.2.3.pkg> provided here http://cran.r-project.org/bin/macosx/tools/. It seems to be out-dated...
For R version, I was using *R 3.1.0* binary for Mac OS X 10.9 (Mavericks), if that matters. Thanks again for your help. I will try that! Allen On Mon, Apr 21, 2014 at 4:12 PM, Prof Brian Ripley <[email protected]>wrote: > On 21/04/2014 21:44, Allen Lin wrote: > >> Hi all, >> >> I am new to this community so sorry if this question has already been >> answered. >> > > Yes, in the R-admin manual. > > 'The current CRAN âMavericksâ distribution of R is built using > > CC=clang > CXX=clang++ > F77=gfortran-4.8 > FC=$F77 > OBJC=clang > > with clang and clang++ from Xcode 5, and the Fortran compiler from > http://r.research.att.com/libs/gfortran-4.8.2-darwin13.tar.bz2.' > > It seems you have not installed that Fortran compiler. (I am guessing: you > did not tell us how your R was built, or if a binary installation from > CRAN, which one.) > > >> I was trying to build the spdep package from source. However, I >> encountered >> error message like the following: >> >> clang -dynamiclib -Wl,-headerpad_max_install_names -undefined >> dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib >> -o spdep.so card.o dfs_ncomp.o dnn.o gabriel.o gearyw.o gsymtest.o init.o >> insiders.o jc.o knn.o lagw.o listw2Matrix.o listw2sn.o ml_sse.o mom_calc.o >> nbdists.o polypoly.o relative.o skater.o soigraph.o symtest.o >> -L/Library/Frameworks/R.framework/Resources/lib -lRlapack >> -L/Library/Frameworks/R.framework/Resources/lib -lRblas >> -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran >> -lquadmath >> -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework >> -Wl,CoreFoundation >> >> >> ld: warning: directory not found for option >> '-L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2' >> >> >> ld: library not found for -lquadmath >> >> >> clang: error: linker command failed with exit code 1 (use -v to see >> invocation) >> >> make: *** [spdep.so] Error 1 >> >> ERROR: compilation failed for package ââ¬Ëspdepââ¬â¢ >> >> >> I checked my L/usr/local/lib/gcc/ directory, there is no folder, but there >> are i686-apple-darwin8 powerpc-apple-darwin8. I suspect this is because on >> the native gcc with Xcode command line tool is version 4.2. But when I run >> gcc -v it shows: >> >> Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr >> --with-gxx-include-dir=/usr/include/c++/4.2.1 >> >> Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn) >> >> Target: x86_64-apple-darwin13.1.0 >> Thread model: posix >> >> How could I point it to the correct directory? >> Any thoughts will be greatly appreciated! I am totally lost.. >> >> Thanks, >> Allen >> >> >> >> _______________________________________________ >> R-SIG-Mac mailing list >> [email protected] >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> >> > > -- > Brian D. Ripley, [email protected] > Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ > University of Oxford, Tel: +44 1865 272861 (self) > 1 South Parks Road, +44 1865 272866 (PA) > Oxford OX1 3TG, UK Fax: +44 1865 272595 > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > -- æ轶伦 LIN, Yilun (Allen) [[alternative HTML version deleted]]
_______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
