yeah, I forgot. Do what Kevin says, grab the texinfo from the r.research.att.com/libs website. Basically this is the first place to look.
Kasper On Sun, May 10, 2015 at 9:49 PM, Marius Hofert <[email protected]> wrote: > Hi, > > Thanks again, Kevin. > > @Kasper: I had a new version (as of today) of MacTeX installed and > texinfo came with it. I had texi2dvi, texi2pdf... but not texi2any, > that's why I thought it's something 'special' and couldn't find it > anywhere else. > > @Kevin: I tried homebrew, but it seemed to fail, saying that it won't > link/install as texinfo is already installed (via MacTeX) :-(. > Interestingly, /usr/local/Cellar/texinfo existed afterwards and it > contained ./5.2/bin/texi2any. I then simply linked from /usr/local/bin > to that file, but still obtained (also after a reboot + as su): > > sklar-2:R-3.2.0_build mhofert$ make info > ERROR: 'texi2any' v5.1 or later needed but missing on your system. > make[2]: *** [R-FAQ.info] Error 1 > make[1]: *** [info] Error 2 > make: [info] Error 2 (ignored) > sklar-2:R-3.2.0_build mhofert$ texi2any --version > texi2any (GNU texinfo) 5.2 > > Copyright (C) 2013 Free Software Foundation, Inc. > License GPLv3+: GNU GPL version 3 or later < > http://gnu.org/licenses/gpl.html> > This is free software: you are free to change and redistribute it. > There is NO WARRANTY, to the extent permitted by law. > > Any ideas? > > Cheers, > Marius > > > On Sun, May 10, 2015 at 9:14 PM, Kevin Ushey <[email protected]> wrote: > > `texi2any` is packaged as part of `texinfo` (note that this is > > documented throughout R-admin), and the latest version is available > > for download (hosted by Simon Urbanek) at: > > > > http://r.research.att.com/libs/texinfo-5.2-darwin10.tar.gz > > > > Or, if you're using homebrew, just use > > > > brew install texinfo > > > > Kevin > > > > On Sun, May 10, 2015 at 6:06 PM, Kasper Daniel Hansen > > <[email protected]> wrote: > >> This is where you look for add-ons > >> http://r.research.att.com/libs > >> for OS X. > >> > >> For texi2any I would install a new version of MacTex. > >> > >> Finally, see the R-admin manual. > >> > >> Best, > >> Kasper > >> > >> On Sun, May 10, 2015 at 8:38 PM, Marius Hofert < > [email protected]> > >> wrote: > >>> > >>> Hi Kevin, > >>> > >>> Thanks a lot for helping. That pushed me on the right track. I then > >>> needed some more tools (Java/XQuartz) and could then install R from > >>> source. Only make pdf; make info failed, saying that 'texi2any' > >>> couldn't be found on the system. I couldn't find any hints online or > >>> in the R administration manual on how to install/get it. I do have > >>> texi2pdf, though. Do you know how to get texi2any? (hope this is > >>> still fine to be discussed in this thread, if not, I can open a new > >>> one). > >>> > >>> Thanks & cheers, > >>> Marius > >>> > >>> > >>> > >>> On Sun, May 10, 2015 at 2:45 PM, Kevin Ushey <[email protected]> > wrote: > >>> > Hi Marius, > >>> > > >>> > I've had success compiling (the latest versions of) R from source > >>> > using Apple's command line tools (shipped with Xcode), alongside > >>> > gfortran 4.8.2 installed from here (as hosted by Simon Urbanek): > >>> > > >>> > http://r.research.att.com/libs/gfortran-4.8.2-darwin13.tar.bz2 > >>> > > >>> > Alternatively, (and what I tend to do by default on OS X), you can > get > >>> > the latest release of `gfortran` using one of the custom Apple > >>> > 'package managers', e.g. with homebrew (http://brew.sh/), you can > use > >>> > > >>> > brew install gcc > >>> > > >>> > which will get you an up-to-date copy of `gcc` (not really needed > >>> > since you'll have Apple clang), but also `gfortran` (which is needed > >>> > as it's no longer shipped with the Apple command line tools). > >>> > > >>> > After this, as long as `gfortran` is on your PATH (e.g. by symlinking > >>> > the binary into /usr/local/bin), you should be good to go for > building > >>> > R from source -- it will then be able to automatically discover where > >>> > the Fortran libraries live, and so on. > >>> > > >>> > Kevin > >>> > > >>> > On Sun, May 10, 2015 at 11:00 AM, peter dalgaard <[email protected]> > >>> > wrote: > >>> >> You do need to read this: > >>> >> > >>> >> http://cran.r-project.org/doc/manuals/r-release/R-admin.html > >>> >> > >>> >> People are not inclined to write significant amounts of the same > >>> >> information to the list... > >>> >> > >>> >> -Peter D > >>> >> > >>> >> > >>> >>> On 10 May 2015, at 19:27 , Marius Hofert < > [email protected]> > >>> >>> wrote: > >>> >>> > >>> >>> Dear Peter, > >>> >>> > >>> >>> Thanks for your quick help. > >>> >>> > >>> >>> I'm not so familiar with the technicalities (and try to learn): > Where > >>> >>> is the file 'config.site' located in your system? Is this supposed > to > >>> >>> be a file which provides settings for 'configure'? > >>> >>> > >>> >>> Thanks & cheers, > >>> >>> Marius > >>> >>> > >>> >>> PS: Also thanks for the hint towards r.research... I'll look into > that > >>> >>> once everything else is running. I already have some things > running, > >>> >>> e.g., texinfo, not sure if the 'texinfo' you mentioned is a > specific > >>> >>> one (but I'll see then). > >>> >>> > >>> >>> > >>> >>> > >>> >>> On Sun, May 10, 2015 at 1:04 PM, peter dalgaard <[email protected]> > >>> >>> wrote: > >>> >>>> > >>> >>>>> On 10 May 2015, at 17:13 , Marius Hofert > >>> >>>>> <[email protected]> wrote: > >>> >>>>> > >>> >>>>> Hi, > >>> >>>>> > >>> >>>>> I'm running Mac OS X Yosemite 10.10.3 on a MacBook Pro (Retina, > >>> >>>>> 13", 2015). I would like to install R from source (various > >>> >>>>> versions etc.) and thus installed Xcode (latest version: > >>> >>>>> 6.3.1). How can I get a Fortran compiler which is compatible with > >>> >>>>> Xcode 6.3.1? > >>> >>>>> > >>> >>>>> Here is what I tried: > >>> >>>>> 1) I used to download and install gfortran-lion-5666-3.pkg from > >>> >>>>> http://r.research.att.com/tools but I now obtain "... can't be > >>> >>>>> installed on this disk. This package requires Xcode 4.1 with > >>> >>>>> gcc-4.2 (build 5666.3)". It seems that my (newer) Xcode version > >>> >>>>> is not recognized. > >>> >>>>> 2) I then installed gfortran-4.2.3.dmg from CRAN -> Download R > >>> >>>>> for (Mac) OS X -> tools. This worked fine, but then I ran into > this > >>> >>>>> issue: > >>> >>>>> I wanted to install MPI and thus downloaded and unpacked > >>> >>>>> openmpi-1.8.5.tar.gz from http://www.open-mpi.org/software/ompi/ > >>> >>>>> but ./configure leads to an error: > >>> >>>>> > >>> >>>>> ... > >>> >>>>> checking if C and Fortran are link compatible... no > >>> >>>>> > >>> >>>>> > ********************************************************************** > >>> >>>>> It appears that your Fortran compiler is unable to link against > >>> >>>>> object files created by your C compiler. This typically > indicates > >>> >>>>> one of a few possibilities: > >>> >>>>> > >>> >>>>> - A conflict between CFLAGS and FCFLAGS > >>> >>>>> - A problem with your compiler installation(s) > >>> >>>>> - Different default build options between compilers (e.g., C > >>> >>>>> building for 32 bit and Fortran building for 64 bit) > >>> >>>>> - Incompatible compilers > >>> >>>>> > >>> >>>>> Such problems can usually be solved by picking compatible > compilers > >>> >>>>> and/or CFLAGS and FCFLAGS. More information (including exactly > what > >>> >>>>> command was given to the compilers and what error resulted when > the > >>> >>>>> commands were executed) is available in the config.log file in > this > >>> >>>>> directory. > >>> >>>>> > >>> >>>>> > ********************************************************************** > >>> >>>>> configure: error: C and Fortran compilers are not link > compatible. > >>> >>>>> Can not continue. > >>> >>>>> sklar-2:openmpi-1.8.5 mhofert$ > >>> >>>>> > >>> >>>>> I found this post > >>> >>>>> > >>> >>>>> ( > http://grokbase.com/t/r/r-sig-mac/14awnd0341/compiling-r-3-1-1-sources-under-os-x-yosemite > ) > >>> >>>>> which seems to be related, but since there are no clear > >>> >>>>> instructions/scripts given, I still don't have a solution. > >>> >>>>> > >>> >>>>> How can I get a suitable/compatible Fortran compiler? > >>> >>>>> > >>> >>>> > >>> >>>> I think you already have one, you just need to set flags properly > - > >>> >>>> the typical problem is that, with default settings, you get C > compiled for > >>> >>>> 64 bits and Fortran for 32 bit. > >>> >>>> > >>> >>>> I have this: > >>> >>>> > >>> >>>> $ more config.site > >>> >>>> r_arch=${r_arch:=x86_64} > >>> >>>> CC="gcc -arch $r_arch" > >>> >>>> CXX="g++ -arch $r_arch" > >>> >>>> F77="gfortran -arch $r_arch" > >>> >>>> FC="gfortran -arch $r_arch" > >>> >>>> OBJC="gcc -arch $r_arch" > >>> >>>> with_blas="-framework vecLib" > >>> >>>> with_lapack=yes > >>> >>>> CURL_CONFIG=/usr/bin/curl-config > >>> >>>> > >>> >>>> Notice also, that with the newer sources, you need to install some > >>> >>>> stuff from http://r.research.att.com/libs/ : pcre, xz, texinfo, > plus maybe > >>> >>>> some more that I have forgotten. > >>> >>>> > >>> >>>> > >>> >>>> > >>> >>>>> Thanks & cheers, > >>> >>>>> Marius > >>> >>>>> > >>> >>>>> _______________________________________________ > >>> >>>>> R-SIG-Mac mailing list > >>> >>>>> [email protected] > >>> >>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > >>> >>>> > >>> >>>> -- > >>> >>>> Peter Dalgaard, Professor, > >>> >>>> Center for Statistics, Copenhagen Business School > >>> >>>> Solbjerg Plads 3, 2000 Frederiksberg, Denmark > >>> >>>> Phone: (+45)38153501 > >>> >>>> Email: [email protected] Priv: [email protected] > >>> >> > >>> >> -- > >>> >> Peter Dalgaard, Professor, > >>> >> Center for Statistics, Copenhagen Business School > >>> >> Solbjerg Plads 3, 2000 Frederiksberg, Denmark > >>> >> Phone: (+45)38153501 > >>> >> Email: [email protected] Priv: [email protected] > >>> >> > >>> >> _______________________________________________ > >>> >> R-SIG-Mac mailing list > >>> >> [email protected] > >>> >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > >>> > >>> _______________________________________________ > >>> R-SIG-Mac mailing list > >>> [email protected] > >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > >> > >> > [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
