Marius, Best guess -- you probably need to call 'configure' again.
Kevin On May 10, 2015 19:00, "Kasper Daniel Hansen" <[email protected]> wrote: > yeah, I forgot. > > Do what Kevin says, grab the texinfo from the r.research.att.com/libs > website. Basically this is the first place to look. > > Kasper > > On Sun, May 10, 2015 at 9:49 PM, Marius Hofert <[email protected] > > wrote: > >> Hi, >> >> Thanks again, Kevin. >> >> @Kasper: I had a new version (as of today) of MacTeX installed and >> texinfo came with it. I had texi2dvi, texi2pdf... but not texi2any, >> that's why I thought it's something 'special' and couldn't find it >> anywhere else. >> >> @Kevin: I tried homebrew, but it seemed to fail, saying that it won't >> link/install as texinfo is already installed (via MacTeX) :-(. >> Interestingly, /usr/local/Cellar/texinfo existed afterwards and it >> contained ./5.2/bin/texi2any. I then simply linked from /usr/local/bin >> to that file, but still obtained (also after a reboot + as su): >> >> sklar-2:R-3.2.0_build mhofert$ make info >> ERROR: 'texi2any' v5.1 or later needed but missing on your system. >> make[2]: *** [R-FAQ.info] Error 1 >> make[1]: *** [info] Error 2 >> make: [info] Error 2 (ignored) >> sklar-2:R-3.2.0_build mhofert$ texi2any --version >> texi2any (GNU texinfo) 5.2 >> >> Copyright (C) 2013 Free Software Foundation, Inc. >> License GPLv3+: GNU GPL version 3 or later < >> http://gnu.org/licenses/gpl.html> >> This is free software: you are free to change and redistribute it. >> There is NO WARRANTY, to the extent permitted by law. >> >> Any ideas? >> >> Cheers, >> Marius >> >> >> On Sun, May 10, 2015 at 9:14 PM, Kevin Ushey <[email protected]> >> wrote: >> > `texi2any` is packaged as part of `texinfo` (note that this is >> > documented throughout R-admin), and the latest version is available >> > for download (hosted by Simon Urbanek) at: >> > >> > http://r.research.att.com/libs/texinfo-5.2-darwin10.tar.gz >> > >> > Or, if you're using homebrew, just use >> > >> > brew install texinfo >> > >> > Kevin >> > >> > On Sun, May 10, 2015 at 6:06 PM, Kasper Daniel Hansen >> > <[email protected]> wrote: >> >> This is where you look for add-ons >> >> http://r.research.att.com/libs >> >> for OS X. >> >> >> >> For texi2any I would install a new version of MacTex. >> >> >> >> Finally, see the R-admin manual. >> >> >> >> Best, >> >> Kasper >> >> >> >> On Sun, May 10, 2015 at 8:38 PM, Marius Hofert < >> [email protected]> >> >> wrote: >> >>> >> >>> Hi Kevin, >> >>> >> >>> Thanks a lot for helping. That pushed me on the right track. I then >> >>> needed some more tools (Java/XQuartz) and could then install R from >> >>> source. Only make pdf; make info failed, saying that 'texi2any' >> >>> couldn't be found on the system. I couldn't find any hints online or >> >>> in the R administration manual on how to install/get it. I do have >> >>> texi2pdf, though. Do you know how to get texi2any? (hope this is >> >>> still fine to be discussed in this thread, if not, I can open a new >> >>> one). >> >>> >> >>> Thanks & cheers, >> >>> Marius >> >>> >> >>> >> >>> >> >>> On Sun, May 10, 2015 at 2:45 PM, Kevin Ushey <[email protected]> >> wrote: >> >>> > Hi Marius, >> >>> > >> >>> > I've had success compiling (the latest versions of) R from source >> >>> > using Apple's command line tools (shipped with Xcode), alongside >> >>> > gfortran 4.8.2 installed from here (as hosted by Simon Urbanek): >> >>> > >> >>> > http://r.research.att.com/libs/gfortran-4.8.2-darwin13.tar.bz2 >> >>> > >> >>> > Alternatively, (and what I tend to do by default on OS X), you can >> get >> >>> > the latest release of `gfortran` using one of the custom Apple >> >>> > 'package managers', e.g. with homebrew (http://brew.sh/), you can >> use >> >>> > >> >>> > brew install gcc >> >>> > >> >>> > which will get you an up-to-date copy of `gcc` (not really needed >> >>> > since you'll have Apple clang), but also `gfortran` (which is needed >> >>> > as it's no longer shipped with the Apple command line tools). >> >>> > >> >>> > After this, as long as `gfortran` is on your PATH (e.g. by >> symlinking >> >>> > the binary into /usr/local/bin), you should be good to go for >> building >> >>> > R from source -- it will then be able to automatically discover >> where >> >>> > the Fortran libraries live, and so on. >> >>> > >> >>> > Kevin >> >>> > >> >>> > On Sun, May 10, 2015 at 11:00 AM, peter dalgaard <[email protected]> >> >>> > wrote: >> >>> >> You do need to read this: >> >>> >> >> >>> >> http://cran.r-project.org/doc/manuals/r-release/R-admin.html >> >>> >> >> >>> >> People are not inclined to write significant amounts of the same >> >>> >> information to the list... >> >>> >> >> >>> >> -Peter D >> >>> >> >> >>> >> >> >>> >>> On 10 May 2015, at 19:27 , Marius Hofert < >> [email protected]> >> >>> >>> wrote: >> >>> >>> >> >>> >>> Dear Peter, >> >>> >>> >> >>> >>> Thanks for your quick help. >> >>> >>> >> >>> >>> I'm not so familiar with the technicalities (and try to learn): >> Where >> >>> >>> is the file 'config.site' located in your system? Is this >> supposed to >> >>> >>> be a file which provides settings for 'configure'? >> >>> >>> >> >>> >>> Thanks & cheers, >> >>> >>> Marius >> >>> >>> >> >>> >>> PS: Also thanks for the hint towards r.research... I'll look into >> that >> >>> >>> once everything else is running. I already have some things >> running, >> >>> >>> e.g., texinfo, not sure if the 'texinfo' you mentioned is a >> specific >> >>> >>> one (but I'll see then). >> >>> >>> >> >>> >>> >> >>> >>> >> >>> >>> On Sun, May 10, 2015 at 1:04 PM, peter dalgaard <[email protected] >> > >> >>> >>> wrote: >> >>> >>>> >> >>> >>>>> On 10 May 2015, at 17:13 , Marius Hofert >> >>> >>>>> <[email protected]> wrote: >> >>> >>>>> >> >>> >>>>> Hi, >> >>> >>>>> >> >>> >>>>> I'm running Mac OS X Yosemite 10.10.3 on a MacBook Pro (Retina, >> >>> >>>>> 13", 2015). I would like to install R from source (various >> >>> >>>>> versions etc.) and thus installed Xcode (latest version: >> >>> >>>>> 6.3.1). How can I get a Fortran compiler which is compatible >> with >> >>> >>>>> Xcode 6.3.1? >> >>> >>>>> >> >>> >>>>> Here is what I tried: >> >>> >>>>> 1) I used to download and install gfortran-lion-5666-3.pkg from >> >>> >>>>> http://r.research.att.com/tools but I now obtain "... can't be >> >>> >>>>> installed on this disk. This package requires Xcode 4.1 with >> >>> >>>>> gcc-4.2 (build 5666.3)". It seems that my (newer) Xcode version >> >>> >>>>> is not recognized. >> >>> >>>>> 2) I then installed gfortran-4.2.3.dmg from CRAN -> Download R >> >>> >>>>> for (Mac) OS X -> tools. This worked fine, but then I ran into >> this >> >>> >>>>> issue: >> >>> >>>>> I wanted to install MPI and thus downloaded and unpacked >> >>> >>>>> openmpi-1.8.5.tar.gz from >> http://www.open-mpi.org/software/ompi/ >> >>> >>>>> but ./configure leads to an error: >> >>> >>>>> >> >>> >>>>> ... >> >>> >>>>> checking if C and Fortran are link compatible... no >> >>> >>>>> >> >>> >>>>> >> ********************************************************************** >> >>> >>>>> It appears that your Fortran compiler is unable to link against >> >>> >>>>> object files created by your C compiler. This typically >> indicates >> >>> >>>>> one of a few possibilities: >> >>> >>>>> >> >>> >>>>> - A conflict between CFLAGS and FCFLAGS >> >>> >>>>> - A problem with your compiler installation(s) >> >>> >>>>> - Different default build options between compilers (e.g., C >> >>> >>>>> building for 32 bit and Fortran building for 64 bit) >> >>> >>>>> - Incompatible compilers >> >>> >>>>> >> >>> >>>>> Such problems can usually be solved by picking compatible >> compilers >> >>> >>>>> and/or CFLAGS and FCFLAGS. More information (including exactly >> what >> >>> >>>>> command was given to the compilers and what error resulted when >> the >> >>> >>>>> commands were executed) is available in the config.log file in >> this >> >>> >>>>> directory. >> >>> >>>>> >> >>> >>>>> >> ********************************************************************** >> >>> >>>>> configure: error: C and Fortran compilers are not link >> compatible. >> >>> >>>>> Can not continue. >> >>> >>>>> sklar-2:openmpi-1.8.5 mhofert$ >> >>> >>>>> >> >>> >>>>> I found this post >> >>> >>>>> >> >>> >>>>> ( >> http://grokbase.com/t/r/r-sig-mac/14awnd0341/compiling-r-3-1-1-sources-under-os-x-yosemite >> ) >> >>> >>>>> which seems to be related, but since there are no clear >> >>> >>>>> instructions/scripts given, I still don't have a solution. >> >>> >>>>> >> >>> >>>>> How can I get a suitable/compatible Fortran compiler? >> >>> >>>>> >> >>> >>>> >> >>> >>>> I think you already have one, you just need to set flags >> properly - >> >>> >>>> the typical problem is that, with default settings, you get C >> compiled for >> >>> >>>> 64 bits and Fortran for 32 bit. >> >>> >>>> >> >>> >>>> I have this: >> >>> >>>> >> >>> >>>> $ more config.site >> >>> >>>> r_arch=${r_arch:=x86_64} >> >>> >>>> CC="gcc -arch $r_arch" >> >>> >>>> CXX="g++ -arch $r_arch" >> >>> >>>> F77="gfortran -arch $r_arch" >> >>> >>>> FC="gfortran -arch $r_arch" >> >>> >>>> OBJC="gcc -arch $r_arch" >> >>> >>>> with_blas="-framework vecLib" >> >>> >>>> with_lapack=yes >> >>> >>>> CURL_CONFIG=/usr/bin/curl-config >> >>> >>>> >> >>> >>>> Notice also, that with the newer sources, you need to install >> some >> >>> >>>> stuff from http://r.research.att.com/libs/ : pcre, xz, texinfo, >> plus maybe >> >>> >>>> some more that I have forgotten. >> >>> >>>> >> >>> >>>> >> >>> >>>> >> >>> >>>>> Thanks & cheers, >> >>> >>>>> Marius >> >>> >>>>> >> >>> >>>>> _______________________________________________ >> >>> >>>>> R-SIG-Mac mailing list >> >>> >>>>> [email protected] >> >>> >>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> >>> >>>> >> >>> >>>> -- >> >>> >>>> Peter Dalgaard, Professor, >> >>> >>>> Center for Statistics, Copenhagen Business School >> >>> >>>> Solbjerg Plads 3, 2000 Frederiksberg, Denmark >> >>> >>>> Phone: (+45)38153501 >> >>> >>>> Email: [email protected] Priv: [email protected] >> >>> >> >> >>> >> -- >> >>> >> Peter Dalgaard, Professor, >> >>> >> Center for Statistics, Copenhagen Business School >> >>> >> Solbjerg Plads 3, 2000 Frederiksberg, Denmark >> >>> >> Phone: (+45)38153501 >> >>> >> Email: [email protected] Priv: [email protected] >> >>> >> >> >>> >> _______________________________________________ >> >>> >> R-SIG-Mac mailing list >> >>> >> [email protected] >> >>> >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> >>> >> >>> _______________________________________________ >> >>> R-SIG-Mac mailing list >> >>> [email protected] >> >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> >> >> >> >> > > [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
