On 15/01/2018 6:03 PM, Manuel Spínola wrote:
Thank you very much Ben.
But I am trying to make an update, not a first time installation. The
older sf version is running fine.
Building from source needs more from your system than installing a
prebuilt binary. If you aren't willing or able to follow Ben's
instructions, you'll just have to wait until Simon's binary build makes
it onto CRAN.
Duncan Murdoch
Manuel
2018-01-15 10:40 GMT-06:00 Ben Tupper <btup...@bigelow.org>:
Hi,
sf (and many other spatial packages) depend upon gdal (
http://www.gdal.org/) being installed on your platform. Your message
says it can't find the gdal-config utility, "checking for gdal-config...
no". You can install it following these instructions...
https://trac.osgeo.org/gdal/wiki/DownloadingGdalBinaries
I'm not sure about the other packages you list.
Cheers,
Ben
On Jan 15, 2018, at 11:25 AM, Manuel Spínola <mspinol...@gmail.com> wrote:
I am still having problems updating some packages, for example,
sf
Hmisc
rms
mgcv
RcmdrMisc
Same messages that I showed in my first email.
Manuel
2018-01-11 12:17 GMT-06:00 Simon Urbanek <simon.urba...@r-project.org>:
Manuel,
the archiving on CRAN has changed recently which broke the updates so
recently the update for macOS packages have been suspended. Hence some most
recent binaries is not available yet - it should be up by tomorrow.
Cheers,
Simon
On Jan 11, 2018, at 12:26 PM, Manuel Spínola <mspinol...@gmail.com>
wrote:
Dear list members,
When trying updating some packages in MacOS High Sierra 10.13 (R 3.4.2)
some packages, as "sf", fails:
install.packages("sf")
There is a binary version available but the source version is later:
binary source needs_compilation
sf 0.5-5 0.6-0 TRUE
Do you want to install from sources the package which needs compilation?
y/n: y
installing the source package ‘sf’
trying URL 'https://cran.rstudio.com/src/contrib/sf_0.6-0.tar.gz'
Content type 'application/x-gzip' length 7399611 bytes (7.1 MB)
==================================================
downloaded 7.1 MB
Warning in strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
unknown timezone 'default/America/Costa_Rica'
* installing *source* package ‘sf’ ...
** package ‘sf’ successfully unpacked and MD5 sums checked
configure: CC: clang
configure: CXX: clang++
checking for gdal-config... no
no
configure: error: gdal-config not found or not executable.
ERROR: configuration failed for package ‘sf’
* removing
‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/sf’
* restoring previous
‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/sf’
Warning in install.packages :
installation of package ‘sf’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/gf/vwlbzml90wv7cs2r4v00wg_m0000gn/T/RtmpbmvcCh/
downloaded_packages’
Any solution to this problem?
Manuel
--
*Manuel Spínola, Ph.D.*
Instituto Internacional en Conservación y Manejo de Vida Silvestre
Universidad Nacional
Apartado 1350-3000
Heredia
COSTA RICA
mspin...@una.cr <mspin...@una.ac.cr>
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Teléfono: (506) 8706 - 4662
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--
*Manuel Spínola, Ph.D.*
Instituto Internacional en Conservación y Manejo de Vida Silvestre
Universidad Nacional
Apartado 1350-3000
Heredia
COSTA RICA
mspin...@una.cr <mspin...@una.ac.cr>
mspinol...@gmail.com
Teléfono: (506) 8706 - 4662
Personal website: Lobito de río <https://sites.google.com/
site/lobitoderio/>
Institutional website: ICOMVIS <http://www.icomvis.una.ac.cr/>
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Ben Tupper
Bigelow Laboratory for Ocean Sciences
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