Yes, I did, if you used R 3.6.0 there would be no issue (as long as you have command line tools installed).
Cheers, Simon > On Apr 24, 2019, at 12:06, Roy Mendelssohn - NOAA Federal via R-SIG-Mac > <r-sig-mac@r-project.org> wrote: > > Yes that is where I found the command. I would add though that I had done > that for Xcode 10.2.0, and appears that when you install the new versions > that the installer actually deletes the headers at that location. At least > that is what happened to me when I updated to Xcode 10.2.1. So people should > be aware of this. Each update may delete the headers. > > In the previous thread, Simon was looking into possibly changing where the R > tools look for the headers, but that sort of thing is beyond my pay grade. > > -Roy > >> On Apr 24, 2019, at 9:01 AM, Tierney, Luke <luke-tier...@uiowa.edu> wrote: >> >> Also documented in the 'R Installation and Administration' manual -- >> always a good place to look. >> >> Best, >> >> luke >> >> On Wed, 24 Apr 2019, Kasper Daniel Hansen wrote: >> >>> Doh! Sorry to have missed that email thread. >>> >>> This advice solved the issue for me. >>> >>> On Wed, Apr 24, 2019 at 11:41 AM Roy Mendelssohn - NOAA Federal < >>> roy.mendelss...@noaa.gov> wrote: >>> >>>> Hi Kaspar: >>>> >>>> There is an issue of where Xcode puts headers. I have posted on this >>>> previously. I did the same update as you, and not only doesn't Xcode put >>>> the headers where R expects, it appears to delete the existing headers. >>>> >>>> Anyhow, try running the following and see if your problems go away: >>>> >>>>> sudo installer -pkg \ >>>>> >>>> /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg >>>> \ >>>>> -target / >>>> >>>> -Roy >>>> >>>>> On Apr 24, 2019, at 8:36 AM, Kasper Daniel Hansen < >>>> kasperdanielhan...@gmail.com> wrote: >>>>> >>>>> I am on Mojave. I recently updated to Xcode 10.2.1 and I did the >>>> associated >>>>> update of the command line tools. Following this, I reinstalled clang6 >>>> and >>>>> gfortran 6 from CRAN. >>>>> >>>>> When I use the clang6 compiler from CRAN, it is unable to find stdio.h. >>>>> >>>>> When I compare the include path from clang6 to the Apple suppled clang >>>> with >>>>> `$CC -E - -v` I get >>>>> >>>>> with Apple clang >>>>> #include <...> search starts here: >>>>> /usr/local/include >>>>> >>>> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/10.0.1/include >>>>> >>>> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include >>>>> >>>> /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include >>>>> >>>> /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks >>>>> (framework directory) >>>>> End of search list. >>>>> >>>>> with clang6 from CRAN >>>>> #include <...> search starts here: >>>>> /usr/local/include >>>>> /usr/local/clang6/lib/clang/6.0.0/include >>>>> /System/Library/Frameworks (framework directory) >>>>> /Library/Frameworks (framework directory) >>>>> End of search list. >>>>> >>>>> Did Apple move the headers around? Or have I somehow hosed my system? >>>>> >>>>> Best, >>>>> Kasper >>>>> >>>>> [[alternative HTML version deleted]] >>>>> >>>>> _______________________________________________ >>>>> R-SIG-Mac mailing list >>>>> R-SIG-Mac@r-project.org >>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>>> >>>> ********************** >>>> "The contents of this message do not reflect any position of the U.S. >>>> Government or NOAA." >>>> ********************** >>>> Roy Mendelssohn >>>> Supervisory Operations Research Analyst >>>> NOAA/NMFS >>>> Environmental Research Division >>>> Southwest Fisheries Science Center >>>> ***Note new street address*** >>>> 110 McAllister Way >>>> Santa Cruz, CA 95060 >>>> Phone: (831)-420-3666 >>>> Fax: (831) 420-3980 >>>> e-mail: roy.mendelss...@noaa.gov www: http://www.pfeg.noaa.gov/ >>>> >>>> "Old age and treachery will overcome youth and skill." >>>> "From those who have been given much, much will be expected" >>>> "the arc of the moral universe is long, but it bends toward justice" -MLK >>>> Jr. >>>> >>>> >>> >>> [[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> R-SIG-Mac@r-project.org >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>> >> >> -- >> Luke Tierney >> Ralph E. Wareham Professor of Mathematical Sciences >> University of Iowa Phone: 319-335-3386 >> Department of Statistics and Fax: 319-335-3017 >> Actuarial Science >> 241 Schaeffer Hall email: luke-tier...@uiowa.edu >> Iowa City, IA 52242 WWW: http://www.stat.uiowa.edu > > ********************** > "The contents of this message do not reflect any position of the U.S. > Government or NOAA." > ********************** > Roy Mendelssohn > Supervisory Operations Research Analyst > NOAA/NMFS > Environmental Research Division > Southwest Fisheries Science Center > ***Note new street address*** > 110 McAllister Way > Santa Cruz, CA 95060 > Phone: (831)-420-3666 > Fax: (831) 420-3980 > e-mail: roy.mendelss...@noaa.gov www: http://www.pfeg.noaa.gov/ > > "Old age and treachery will overcome youth and skill." > "From those who have been given much, much will be expected" > "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
