I just saw that the Mac version was now available. given the numbering this would mean reinstalling packages correct? If i use in mechanism in the R GUI to do so, does it preserve location - that is the packages in the Framework directory are update to that system location, and the packages in my own library stay in my own library?
If not, I should be able to write a script to do so, but if the GUI will already do it, i would prefer to use that. May wait a few days for packages to keep up. thanks for all your work, -roy > On Apr 28, 2019, at 3:13 PM, Simon Urbanek <simon.urba...@r-project.org> > wrote: > > Yes, I did, if you used R 3.6.0 there would be no issue (as long as you have > command line tools installed). > > Cheers, > Simon > > >> On Apr 24, 2019, at 12:06, Roy Mendelssohn - NOAA Federal via R-SIG-Mac >> <r-sig-mac@r-project.org> wrote: >> >> Yes that is where I found the command. I would add though that I had done >> that for Xcode 10.2.0, and appears that when you install the new versions >> that the installer actually deletes the headers at that location. At least >> that is what happened to me when I updated to Xcode 10.2.1. So people >> should be aware of this. Each update may delete the headers. >> >> In the previous thread, Simon was looking into possibly changing where the >> R tools look for the headers, but that sort of thing is beyond my pay grade. >> >> >> -Roy >> >>> On Apr 24, 2019, at 9:01 AM, Tierney, Luke <luke-tier...@uiowa.edu> wrote: >>> >>> Also documented in the 'R Installation and Administration' manual -- >>> always a good place to look. >>> >>> Best, >>> >>> luke >>> >>> On Wed, 24 Apr 2019, Kasper Daniel Hansen wrote: >>> >>>> Doh! Sorry to have missed that email thread. >>>> >>>> This advice solved the issue for me. >>>> >>>> On Wed, Apr 24, 2019 at 11:41 AM Roy Mendelssohn - NOAA Federal < >>>> roy.mendelss...@noaa.gov> wrote: >>>> >>>>> Hi Kaspar: >>>>> >>>>> There is an issue of where Xcode puts headers. I have posted on this >>>>> previously. I did the same update as you, and not only doesn't Xcode put >>>>> the headers where R expects, it appears to delete the existing headers. >>>>> >>>>> Anyhow, try running the following and see if your problems go away: >>>>> >>>>>> sudo installer -pkg \ >>>>>> >>>>> /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg >>>>> \ >>>>>> -target / >>>>> >>>>> -Roy >>>>> >>>>>> On Apr 24, 2019, at 8:36 AM, Kasper Daniel Hansen < >>>>> kasperdanielhan...@gmail.com> wrote: >>>>>> >>>>>> I am on Mojave. I recently updated to Xcode 10.2.1 and I did the >>>>> associated >>>>>> update of the command line tools. Following this, I reinstalled clang6 >>>>> and >>>>>> gfortran 6 from CRAN. >>>>>> >>>>>> When I use the clang6 compiler from CRAN, it is unable to find stdio.h. >>>>>> >>>>>> When I compare the include path from clang6 to the Apple suppled clang >>>>> with >>>>>> `$CC -E - -v` I get >>>>>> >>>>>> with Apple clang >>>>>> #include <...> search starts here: >>>>>> /usr/local/include >>>>>> >>>>> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/10.0.1/include >>>>>> >>>>> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include >>>>>> >>>>> /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include >>>>>> >>>>> /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks >>>>>> (framework directory) >>>>>> End of search list. >>>>>> >>>>>> with clang6 from CRAN >>>>>> #include <...> search starts here: >>>>>> /usr/local/include >>>>>> /usr/local/clang6/lib/clang/6.0.0/include >>>>>> /System/Library/Frameworks (framework directory) >>>>>> /Library/Frameworks (framework directory) >>>>>> End of search list. >>>>>> >>>>>> Did Apple move the headers around? Or have I somehow hosed my system? >>>>>> >>>>>> Best, >>>>>> Kasper >>>>>> >>>>>> [[alternative HTML version deleted]] >>>>>> >>>>>> _______________________________________________ >>>>>> R-SIG-Mac mailing list >>>>>> R-SIG-Mac@r-project.org >>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>>>> >>>>> ********************** >>>>> "The contents of this message do not reflect any position of the U.S. >>>>> Government or NOAA." >>>>> ********************** >>>>> Roy Mendelssohn >>>>> Supervisory Operations Research Analyst >>>>> NOAA/NMFS >>>>> Environmental Research Division >>>>> Southwest Fisheries Science Center >>>>> ***Note new street address*** >>>>> 110 McAllister Way >>>>> Santa Cruz, CA 95060 >>>>> Phone: (831)-420-3666 >>>>> Fax: (831) 420-3980 >>>>> e-mail: roy.mendelss...@noaa.gov www: http://www.pfeg.noaa.gov/ >>>>> >>>>> "Old age and treachery will overcome youth and skill." >>>>> "From those who have been given much, much will be expected" >>>>> "the arc of the moral universe is long, but it bends toward justice" -MLK >>>>> Jr. >>>>> >>>>> >>>> >>>> [[alternative HTML version deleted]] >>>> >>>> _______________________________________________ >>>> R-SIG-Mac mailing list >>>> R-SIG-Mac@r-project.org >>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>>> >>> >>> -- >>> Luke Tierney >>> Ralph E. Wareham Professor of Mathematical Sciences >>> University of Iowa Phone: 319-335-3386 >>> Department of Statistics and Fax: 319-335-3017 >>> Actuarial Science >>> 241 Schaeffer Hall email: luke-tier...@uiowa.edu >>> Iowa City, IA 52242 WWW: http://www.stat.uiowa.edu >> >> ********************** >> "The contents of this message do not reflect any position of the U.S. >> Government or NOAA." >> ********************** >> Roy Mendelssohn >> Supervisory Operations Research Analyst >> NOAA/NMFS >> Environmental Research Division >> Southwest Fisheries Science Center >> ***Note new street address*** >> 110 McAllister Way >> Santa Cruz, CA 95060 >> Phone: (831)-420-3666 >> Fax: (831) 420-3980 >> e-mail: roy.mendelss...@noaa.gov www: http://www.pfeg.noaa.gov/ >> >> "Old age and treachery will overcome youth and skill." >> "From those who have been given much, much will be expected" >> "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. >> >> _______________________________________________ >> R-SIG-Mac mailing list >> R-SIG-Mac@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
