Hi Michael, Looks like you have two installations of graphviz; the one in sw/ is from fink. I am not sure why it would interfere, but perhaps you should use fink to remove the one in sw.
I assume you saw my post to the group last night...Seth's recommendation to you worked for me once I used gcc_select 3.3 (the original suggestion to me to either export the LD_PATH or specify the graphviz location directly to R did not work). that is, #check to see that usr/local/lib/graphviz and usr/local/lib/pkginfo exist (created from the graphviz installation) #make sure gcc3.3 is set up correctly: sudo gcc_select 3.3 #export the location. Note that the expot command doesn't work in csh or tcsh, so you should use bash export PKG_CONFIG_PATH=/usr/local/lib/pkgconfig #then compile and install Rgaphviz R CMD INSTALL Rgraphviz_1.8.0.tar.gz hope that helps... Julin Michael Kubovy wrote: > Hi Byron, > > On Mar 19, 2006, at 3:03 AM, Byron Ellis wrote: >> Did you type 'sudo make install'? If not, graphviz may not have >> actually installed itself (making sure /usr/local/bin/dot exists is a >> way to check this) >> >> I recently did an Rgraphviz build for myself using graphviz-2.9 >> (though 2.8 should also work fine) and Rgraphviz 1.9.6 (the SVN >> version) and pkg-config (which I get from >> http://pkgconfig.freedesktop.org/releases/). >> >> I should note that I don't use Fink or Darwinports and that Glen Low >> (author of Graphviz.app) seems to have wandered off to other things so >> the GUI version of Graphviz is pretty massively out of date these days. > > Thanks for the reply. > > I did type sudo make install. > > % which dot > /sw/bin/dot > > % ls /usr/local/bin/dot > /usr/local/bin/dot > > Both are executable and seem to run: > % dot unix.dot > and > % /usr/local/bin/dot unix.dot > output a file that is different from the input. > > So graphviz is installed. My guess is that Rgraphviz doesn't know it. > _____________________________ > Professor Michael Kubovy > University of Virginia > Department of Psychology > USPS: P.O.Box 400400 Charlottesville, VA 22904-4400 > Parcels: Room 102 Gilmer Hall > McCormick Road Charlottesville, VA 22903 > Office: B011 +1-434-982-4729 > Lab: B019 +1-434-982-4751 > Fax: +1-434-982-4766 > WWW: http://www.people.virginia.edu/~mk9y/ > > -- Julin Maloof Assistant Professor Section of Plant Biology University of California, Davis 1 Shields Ave Davis, CA, 95616 voice: (530) 752-8077 fax: (530) 752-5410 _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
