Thanks to Seth, Byron, and Julin for their help. Apparently I had graphviz installed twice (once using fink).
Once I got rid of it, everything worked. I installed graphviz 2.9 downloaded from http://www.graphviz.org/pub/ graphviz/ARCHIVE/graphviz-2.9.tar.gz and compiled using the commands % ./configure % make % sudo make install Then: % sudo gcc_select 3.3 % setenv PKG_CONFIG_PATH /usr/local/lib/pkgconfig % sudo R R : Copyright 2005, The R Foundation for Statistical Computing Version 2.2.1 (2005-12-20 r36812) <snip> > source("http://bioconductor.org/biocLite.R";) > biocLite("Rgraphviz", type="source") Running bioCLite version 0.1 with R version 2.2.1 Running biocinstall version 1.1 with R version 2.2.1 trying URL 'http://www.bioconductor.org/packages/bioc/1.7/src/contrib/ Rgraphviz_1.8.0.tar.gz' Content type 'application/x-gzip' length 1666191 bytes opened URL ================================================== downloaded 1627Kb * Installing *source* package 'Rgraphviz' ... <snip> ** building package indices ... * DONE (Rgraphviz) The downloaded packages are in /private/tmp/Rtmp1SLt6w/downloaded_packages _____________________________ Professor Michael Kubovy University of Virginia Department of Psychology USPS: P.O.Box 400400 Charlottesville, VA 22904-4400 Parcels: Room 102 Gilmer Hall McCormick Road Charlottesville, VA 22903 Office: B011 +1-434-982-4729 Lab: B019 +1-434-982-4751 Fax: +1-434-982-4766 WWW: http://www.people.virginia.edu/~mk9y/ _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
