And just to clarify, the error in affxparser is special to that package, and has nothing to do with the rest of the Bioconductor packages.
/Kasper On May 12, 2006, at 1:43 PM, Kasper Daniel Hansen wrote: > Having said that, affxparser does not work on Mac OS using the > version of gcc shipped with R-2.3.0. We are working on it. > > /Kasper > > On May 12, 2006, at 8:39 AM, Simon Urbanek wrote: > >> >> On May 12, 2006, at 8:36 AM, Booman, M wrote: >> >>> Hi Sean, >>> >>> Thanks for your reply. I managed to install most of them as source >>> packages, but for a number of them (and of course the ones I need >>> most) I got an error message saying that compilation failed. I have >>> included an example at the bottom of this message. >>> >>> Marije >>> >>> >>> trying URL 'http://www.bioconductor.org/packages/bioc/stable/src/ >>> contrib/affxparser_1.2.0.tar.gz' >>> Content type 'application/x-gzip' length 234898 bytes >>> opened URL >>> ================================================== >>> downloaded 229Kb >>> >>> >>> The downloaded packages are in >>> /private/tmp/RtmpTbWvX1/downloaded_packages >>> * Installing *source* package 'affxparser' ... >>> ** libs >>> ** arch - ppc >>> ** Removing '/Library/Frameworks/R.framework/Versions/2.3/Resources/ >>> library/affxparser' >>> /Library/Frameworks/R.framework/Resources/bin/SHLIB: line 1: make: >>> command not found >> >> ^^ - you don't have Apple Xcode tools installed. Those are required >> to compile packages from sources. >> >> Cheers, >> Simon >> >> _______________________________________________ >> R-SIG-Mac mailing list >> [email protected] >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
