Hi Kasper and Simon, Thank you for your help. Simon, I was able to install a lot of other packages from source files, but the last message from Kasper gave me the answer, it's a package-specific problem.
Marije -----Original Message----- From: Kasper Daniel Hansen [mailto:[EMAIL PROTECTED] Sent: Fri 5/12/2006 10:51 PM And just to clarify, the error in affxparser is special to that package, and has nothing to do with the rest of the Bioconductor packages. /Kasper On May 12, 2006, at 1:43 PM, Kasper Daniel Hansen wrote: > Having said that, affxparser does not work on Mac OS using the > version of gcc shipped with R-2.3.0. We are working on it. > > /Kasper > > On May 12, 2006, at 8:39 AM, Simon Urbanek wrote: > >> >> On May 12, 2006, at 8:36 AM, Booman, M wrote: >> >>> Hi Sean, >>> >>> Thanks for your reply. I managed to install most of them as source >>> packages, but for a number of them (and of course the ones I need >>> most) I got an error message saying that compilation failed. I have >>> included an example at the bottom of this message. >>> >>> Marije >>> >>> >>> trying URL 'http://www.bioconductor.org/packages/bioc/stable/src/ >>> contrib/affxparser_1.2.0.tar.gz' >>> Content type 'application/x-gzip' length 234898 bytes >>> opened URL >>> ================================================== >>> downloaded 229Kb >>> >>> >>> The downloaded packages are in >>> /private/tmp/RtmpTbWvX1/downloaded_packages >>> * Installing *source* package 'affxparser' ... >>> ** libs >>> ** arch - ppc >>> ** Removing '/Library/Frameworks/R.framework/Versions/2.3/Resources/ >>> library/affxparser' >>> /Library/Frameworks/R.framework/Resources/bin/SHLIB: line 1: make: >>> command not found >> >> ^^ - you don't have Apple Xcode tools installed. Those are required >> to compile packages from sources. >> >> Cheers, >> Simon >> >> _______________________________________________ >> R-SIG-Mac mailing list >> [email protected] >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac De inhoud van dit bericht is vertrouwelijk en alleen bestemd voor de geadresseerde(n). Anderen dan de geadresseerde mogen geen gebruik maken van dit bericht, het openbaar maken of op enige wijze verspreiden of vermenigvuldigen. Het UMCG kan niet aansprakelijk gesteld worden voor een incomplete aankomst of vertraging van dit verzonden bericht. The contents of this message are confidential and only intended for the eyes of the addressee(s). Others than the addressee(s) are not allowed to use this message, to make it public or to distribute or multiply this message in any way. The UMCG cannot be held responsible for incomplete reception or delay of this transferred message. [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
