Hi Just wondering if there is a way to "batch comment" in the R editor? I like to paste model outputs in with my scripts and comment them out so I can follow things later. I thought it would be useful to be able to insert a comment symbol to a batch of lines all at once.
Any thoughts? Ken -- Kenneth E. Nussear Research Herpetologist, USGS (702) 564-4515 Fax (702) 564-4600 [EMAIL PROTECTED] On Jan 15, 2008, at 3:00 AM, [EMAIL PROTECTED] wrote: > Send R-SIG-Mac mailing list submissions to > [email protected] > > To subscribe or unsubscribe via the World Wide Web, visit > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > or, via email, send a message with subject or body 'help' to > [EMAIL PROTECTED] > > You can reach the person managing the list at > [EMAIL PROTECTED] > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of R-SIG-Mac digest..." > > > Today's Topics: > > 1. Re: [R] Install RSPerl in Leopard (Prof Brian Ripley) > 2. building R package (Guillaume Blanchet) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Mon, 14 Jan 2008 19:08:26 +0000 (GMT) > From: Prof Brian Ripley <[EMAIL PROTECTED]> > Subject: Re: [R-SIG-Mac] [R] Install RSPerl in Leopard > To: David Ochoa <[EMAIL PROTECTED]> > Cc: [EMAIL PROTECTED] > Message-ID: <[EMAIL PROTECTED]> > Content-Type: text/plain; charset="iso-8859-1" > > On Mon, 14 Jan 2008, Prof Brian Ripley wrote: > >> This is not the most appropriate list. But the first answer is >> that the >> package is not aware of sub-architectures, introduced a while back >> in R. >> >> The best thing is to follow the posting guide and contact the >> author: if that >> fails, people on R-sig-mac might be able to walk you through the >> changes >> needed. It perhaps is as simple as editing >> RSPerl/src/RinPerlMakefile.in to say >> >> include $(R_HOME)/etc$(R_ARCH)/Makeconf >> >> That should fix the first problem. But >> >>> cc1: error: invalid option ?arch=nocona? >> >> suggests there might be a further problem (for which use R-sig-mac). > > On my system at least that seems a compiler options mismatch (it > works on > my self-built version of R-devel with the above change). Removing > -march=nocona in entries in > > /Library/Frameworks/R.framework/Resources/etc/i386/Makeconf > > on the CRAN build made this go to completion. (My build does not > have those.) You can override in CFLAGS in personal Makevars (see > 'Writing R Extensions'). > > But I'll let those more expert than I on R-sig-mac comment on that > issue. > >> >> >> >> On Mon, 14 Jan 2008, David Ochoa wrote: >> >>> Hi, >>> >>> I am having problems installing RSPerl 0.92-1 in my Mac OSX 10.5.1. >>> I?ve installed correctly R-2.6.1 with the .mpkg. >>> I run the next command: <R CMD INSTALL --configure-args=' --with- >>> in- >>> perl ' RSPerl> >>> And the next error message appears: >>> >>> >>> >>> RSPerl >>> * Installing to library '/Library/Frameworks/R.framework/Resources/ >>> library' >>> * Installing *source* package 'RSPerl' ... >>> checking for perl... /usr/bin/perl >>> No support for any of the Perl modules from calling Perl from R. >>> ***************************************************** >>> >>> Set PERL5LIB to /Library/Frameworks/R.framework/Resources/ >>> library/RSPerl/perl >>> >>> ***************************************************** >>> Testing: -F/Library/Frameworks/R.framework/.. -framework R >>> Using '/usr/bin/perl' as the perl executable >>> Perl modules (no): >>> Adding R package to list of Perl modules to enable callbacks to R >>> from >>> Perl >>> Creating the C code for dynamically loading modules with native code >>> for Perl: R >>> modules: R; linking: >>> checking for gcc... gcc >>> checking for C compiler default output file name... a.out >>> checking whether the C compiler works... yes >>> checking whether we are cross compiling... no >>> checking for suffix of executables... >>> checking for suffix of object files... o >>> checking whether we are using the GNU C compiler... yes >>> checking whether gcc accepts -g... yes >>> checking for gcc option to accept ISO C89... none needed >>> Support R in Perl: yes >>> configure: creating ./config.status >>> config.status: creating src/Makevars >>> config.status: creating inst/scripts/RSPerl.csh >>> config.status: creating inst/scripts/RSPerl.bsh >>> config.status: creating src/RinPerlMakefile >>> config.status: creating src/Makefile.PL >>> config.status: creating cleanup >>> config.status: creating src/R.pm >>> config.status: creating R/perl5lib.R >>> making target all in RinPerlMakefile >>> RinPerlMakefile:5: /Library/Frameworks/R.framework/Resources/etc/ >>> Makeconf: No such file or directory >>> make: *** No rule to make target `/Library/Frameworks/R.framework/ >>> Resources/etc/Makeconf'. Stop. >>> calling make -f Makefile.perl install >>> make: Makefile.perl: No such file or directory >>> make: *** No rule to make target `Makefile.perl'. Stop. >>> chmod: blib/lib/R.pm: No such file or directory >>> Finished configuration >>> ** libs >>> ** arch - i386 >>> gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx- >>> version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/ >>> R.framework/Resources/include -I/Library/Frameworks/R.framework/ >>> Resources/include/i386 -I. -arch i386 -arch ppc -g -pipe -fno- >>> common - >>> DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing -Wdeclaration- >>> after- >>> statement -I/usr/local/include -I/System/Library/Perl/5.8.8/darwin- >>> thread-multi-2level/CORE -DPERL_POLLUTE -D_R_=1 -DUSE_R=1 - >>> DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1 -msse3 -fPIC -g -O2 - >>> march=nocona -c Converters.c -o Converters.o >>> cc1: error: invalid option ?arch=nocona? >>> lipo: can't open input file: /var/folders/qc/qcR--kvAHYGoOkmr3ZNtvk >>> ++ >>> +TM/-Tmp-//cclHWEBN.out (No such file or directory) >>> make: *** [Converters.o] Error 1 >>> chmod: /Library/Frameworks/R.framework/Resources/library/RSPerl/ >>> libs/ >>> i386/*: No such file or directory >>> ERROR: compilation failed for package 'RSPerl' >>> ** Removing '/Library/Frameworks/R.framework/Resources/library/ >>> RSPerl' >>> >>> >>> >>> >>> Have I will changed any enviroment variable? >>> Can anybody help me? >>> Thanks >>> >>> >>> >>> David >>> >>> ______________________________________________ >>> [EMAIL PROTECTED] mailing list >>> https://stat.ethz.ch/mailman/listinfo/r-help >>> PLEASE do read the posting guide >>> http://www.R-project.org/posting-guide.html >>> and provide commented, minimal, self-contained, reproducible code. >>> >> >> > > -- > Brian D. Ripley, [EMAIL PROTECTED] > Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ > University of Oxford, Tel: +44 1865 272861 (self) > 1 South Parks Road, +44 1865 272866 (PA) > Oxford OX1 3TG, UK Fax: +44 1865 272595 > > ------------------------------ > > Message: 2 > Date: Mon, 14 Jan 2008 14:42:07 -0700 > From: "Guillaume Blanchet" <[EMAIL PROTECTED]> > Subject: [R-SIG-Mac] building R package > To: [email protected] > Message-ID: > <[EMAIL PROTECTED]> > Content-Type: text/plain > > Hi all ! > > I just installed Mac OS X 10.5.1 on my Intel MacBook Pro. Since I > have my > personal packages that I build and modify every so often I also > installed > Xcode 3. My packages contain either some C code, some Fortran code > or both. > > However, I can not build a binary of my package, which I know to be > error-free since they were running without any bugs when I was > running Tiger > (Mac OS 10.4.11). > > The message that is sent to me when I launch the command "R CMD build > --binary AEM" (AEM being the name of my package) in the terminal is: > > > macintosh:AEM Package ti-guiblanc$ R CMD build --binary AEM > * checking for file 'AEM/DESCRIPTION' ... OK > * preparing 'AEM': > * checking DESCRIPTION meta-information ... OK > * cleaning src > * removing junk files > * checking for LF line-endings in source and make files > * checking for empty or unneeded directories > * building binary distribution > /var/folders/+5/+5Ch2A6BEb4+iULWkg5XEU+++TI/-Tmp-/Rinst965351719 > * Installing *source* package 'AEM' ... > ** libs > ** arch - i386 > gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk > -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp > -I/Library/Frameworks/R.framework/Resources/include > -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 - > fPIC > -g -O2 -march=nocona -c buildbinary.c -o buildbinary.o > gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk > -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib > -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 - > undefined > dynamic_lookup -single_module -multiply_defined suppress -L/usr/ > local/lib -o > AEM.so buildbinary.o -F/Library/Frameworks/R.framework/.. - > framework R > ld: warning, duplicate dylib > /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/libgcc_s.1.dylib > ** arch - ppc > gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk > -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp > -I/Library/Frameworks/R.framework/Resources/include > -I/Library/Frameworks/R.framework/Resources/include/ppc > -I/usr/local/include -fPIC -g -O2 -c buildbinary.c -o > buildbinary.o > gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk > -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib > -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 - > undefined > dynamic_lookup -single_module -multiply_defined suppress -L/usr/ > local/lib -o > AEM.so buildbinary.o -F/Library/Frameworks/R.framework/.. - > framework R > ld: warning, duplicate dylib > /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/libgcc_s.1.dylib > ld: in /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/libstdc++. > 6.dylib, file > is not of required architecture > collect2: ld returned 1 exit status > make: *** [AEM.so] Error 1 > chmod: > /var/folders/+5/+5Ch2A6BEb4+iULWkg5XEU+++TI/-Tmp-/Rinst965351719/AEM/ > libs/ppc/*: > No such file or directory > ERROR: compilation failed for package 'AEM' > ** Removing > '/var/folders/+5/+5Ch2A6BEb4+iULWkg5XEU+++TI/-Tmp-/Rinst965351719/AEM' > ERROR > * installation failed > > > My knowledge of the UNIX code and the terminal is limited, so please > be > gentle ! > > Thanks in advance for any help. > > Have a nice day ! > > Guillaume Blanchet > PhD. candidate > University of Alberta > > [[alternative HTML version deleted]] > > > > ------------------------------ > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > > End of R-SIG-Mac Digest, Vol 59, Issue 8 > **************************************** _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
