Dear all - while we are commenting on features that could go into the currently amazing editor, what about batch indenting? Or have I missed that?
andrew --------------------------------------------------------------------------------- Dr. Andrew Beckerman Department of Animal and Plant Sciences, University of Sheffield, Alfred Denny Building, Western Bank, Sheffield S10 2TN, UK ph +44 (0)114 222 0026; fx +44 (0)114 222 0002 http://www.beckslab.staff.shef.ac.uk/ ---------------------------------------------------------------------------------- On 15 Jan 2008, at 19:36, Ken Nussear wrote: > Hi > > Just wondering if there is a way to "batch comment" in the R editor? I > like to paste model outputs in with my scripts and comment them out so > I can follow things later. I thought it would be useful to be able to > insert a comment symbol to a batch of lines all at once. > > Any thoughts? > > Ken > > -- > Kenneth E. Nussear > Research Herpetologist, USGS > (702) 564-4515 Fax (702) 564-4600 > [EMAIL PROTECTED] > > > On Jan 15, 2008, at 3:00 AM, [EMAIL PROTECTED] > wrote: > >> Send R-SIG-Mac mailing list submissions to >> [email protected] >> >> To subscribe or unsubscribe via the World Wide Web, visit >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> or, via email, send a message with subject or body 'help' to >> [EMAIL PROTECTED] >> >> You can reach the person managing the list at >> [EMAIL PROTECTED] >> >> When replying, please edit your Subject line so it is more specific >> than "Re: Contents of R-SIG-Mac digest..." >> >> >> Today's Topics: >> >> 1. Re: [R] Install RSPerl in Leopard (Prof Brian Ripley) >> 2. building R package (Guillaume Blanchet) >> >> >> ---------------------------------------------------------------------- >> >> Message: 1 >> Date: Mon, 14 Jan 2008 19:08:26 +0000 (GMT) >> From: Prof Brian Ripley <[EMAIL PROTECTED]> >> Subject: Re: [R-SIG-Mac] [R] Install RSPerl in Leopard >> To: David Ochoa <[EMAIL PROTECTED]> >> Cc: [EMAIL PROTECTED] >> Message-ID: <[EMAIL PROTECTED]> >> Content-Type: text/plain; charset="iso-8859-1" >> >> On Mon, 14 Jan 2008, Prof Brian Ripley wrote: >> >>> This is not the most appropriate list. But the first answer is >>> that the >>> package is not aware of sub-architectures, introduced a while back >>> in R. >>> >>> The best thing is to follow the posting guide and contact the >>> author: if that >>> fails, people on R-sig-mac might be able to walk you through the >>> changes >>> needed. It perhaps is as simple as editing >>> RSPerl/src/RinPerlMakefile.in to say >>> >>> include $(R_HOME)/etc$(R_ARCH)/Makeconf >>> >>> That should fix the first problem. But >>> >>>> cc1: error: invalid option ?arch=nocona? >>> >>> suggests there might be a further problem (for which use R-sig-mac). >> >> On my system at least that seems a compiler options mismatch (it >> works on >> my self-built version of R-devel with the above change). Removing >> -march=nocona in entries in >> >> /Library/Frameworks/R.framework/Resources/etc/i386/Makeconf >> >> on the CRAN build made this go to completion. (My build does not >> have those.) You can override in CFLAGS in personal Makevars (see >> 'Writing R Extensions'). >> >> But I'll let those more expert than I on R-sig-mac comment on that >> issue. >> >>> >>> >>> >>> On Mon, 14 Jan 2008, David Ochoa wrote: >>> >>>> Hi, >>>> >>>> I am having problems installing RSPerl 0.92-1 in my Mac OSX 10.5.1. >>>> I?ve installed correctly R-2.6.1 with the .mpkg. >>>> I run the next command: <R CMD INSTALL --configure-args=' --with- >>>> in- >>>> perl ' RSPerl> >>>> And the next error message appears: >>>> >>>> >>>> >>>> RSPerl >>>> * Installing to library '/Library/Frameworks/R.framework/Resources/ >>>> library' >>>> * Installing *source* package 'RSPerl' ... >>>> checking for perl... /usr/bin/perl >>>> No support for any of the Perl modules from calling Perl from R. >>>> ***************************************************** >>>> >>>> Set PERL5LIB to /Library/Frameworks/R.framework/Resources/ >>>> library/RSPerl/perl >>>> >>>> ***************************************************** >>>> Testing: -F/Library/Frameworks/R.framework/.. -framework R >>>> Using '/usr/bin/perl' as the perl executable >>>> Perl modules (no): >>>> Adding R package to list of Perl modules to enable callbacks to R >>>> from >>>> Perl >>>> Creating the C code for dynamically loading modules with native >>>> code >>>> for Perl: R >>>> modules: R; linking: >>>> checking for gcc... gcc >>>> checking for C compiler default output file name... a.out >>>> checking whether the C compiler works... yes >>>> checking whether we are cross compiling... no >>>> checking for suffix of executables... >>>> checking for suffix of object files... o >>>> checking whether we are using the GNU C compiler... yes >>>> checking whether gcc accepts -g... yes >>>> checking for gcc option to accept ISO C89... none needed >>>> Support R in Perl: yes >>>> configure: creating ./config.status >>>> config.status: creating src/Makevars >>>> config.status: creating inst/scripts/RSPerl.csh >>>> config.status: creating inst/scripts/RSPerl.bsh >>>> config.status: creating src/RinPerlMakefile >>>> config.status: creating src/Makefile.PL >>>> config.status: creating cleanup >>>> config.status: creating src/R.pm >>>> config.status: creating R/perl5lib.R >>>> making target all in RinPerlMakefile >>>> RinPerlMakefile:5: /Library/Frameworks/R.framework/Resources/etc/ >>>> Makeconf: No such file or directory >>>> make: *** No rule to make target `/Library/Frameworks/R.framework/ >>>> Resources/etc/Makeconf'. Stop. >>>> calling make -f Makefile.perl install >>>> make: Makefile.perl: No such file or directory >>>> make: *** No rule to make target `Makefile.perl'. Stop. >>>> chmod: blib/lib/R.pm: No such file or directory >>>> Finished configuration >>>> ** libs >>>> ** arch - i386 >>>> gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx- >>>> version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/ >>>> R.framework/Resources/include -I/Library/Frameworks/R.framework/ >>>> Resources/include/i386 -I. -arch i386 -arch ppc -g -pipe -fno- >>>> common - >>>> DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing -Wdeclaration- >>>> after- >>>> statement -I/usr/local/include -I/System/Library/Perl/5.8.8/ >>>> darwin- >>>> thread-multi-2level/CORE -DPERL_POLLUTE -D_R_=1 -DUSE_R=1 - >>>> DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1 -msse3 -fPIC -g -O2 - >>>> march=nocona -c Converters.c -o Converters.o >>>> cc1: error: invalid option ?arch=nocona? >>>> lipo: can't open input file: /var/folders/qc/qcR--kvAHYGoOkmr3ZNtvk >>>> ++ >>>> +TM/-Tmp-//cclHWEBN.out (No such file or directory) >>>> make: *** [Converters.o] Error 1 >>>> chmod: /Library/Frameworks/R.framework/Resources/library/RSPerl/ >>>> libs/ >>>> i386/*: No such file or directory >>>> ERROR: compilation failed for package 'RSPerl' >>>> ** Removing '/Library/Frameworks/R.framework/Resources/library/ >>>> RSPerl' >>>> >>>> >>>> >>>> >>>> Have I will changed any enviroment variable? >>>> Can anybody help me? >>>> Thanks >>>> >>>> >>>> >>>> David >>>> >>>> ______________________________________________ >>>> [EMAIL PROTECTED] mailing list >>>> https://stat.ethz.ch/mailman/listinfo/r-help >>>> PLEASE do read the posting guide >>>> http://www.R-project.org/posting-guide.html >>>> and provide commented, minimal, self-contained, reproducible code. >>>> >>> >>> >> >> -- >> Brian D. Ripley, [EMAIL PROTECTED] >> Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ >> University of Oxford, Tel: +44 1865 272861 (self) >> 1 South Parks Road, +44 1865 272866 (PA) >> Oxford OX1 3TG, UK Fax: +44 1865 272595 >> >> ------------------------------ >> >> Message: 2 >> Date: Mon, 14 Jan 2008 14:42:07 -0700 >> From: "Guillaume Blanchet" <[EMAIL PROTECTED]> >> Subject: [R-SIG-Mac] building R package >> To: [email protected] >> Message-ID: >> <[EMAIL PROTECTED]> >> Content-Type: text/plain >> >> Hi all ! >> >> I just installed Mac OS X 10.5.1 on my Intel MacBook Pro. Since I >> have my >> personal packages that I build and modify every so often I also >> installed >> Xcode 3. My packages contain either some C code, some Fortran code >> or both. >> >> However, I can not build a binary of my package, which I know to be >> error-free since they were running without any bugs when I was >> running Tiger >> (Mac OS 10.4.11). >> >> The message that is sent to me when I launch the command "R CMD build >> --binary AEM" (AEM being the name of my package) in the terminal is: >> >> >> macintosh:AEM Package ti-guiblanc$ R CMD build --binary AEM >> * checking for file 'AEM/DESCRIPTION' ... OK >> * preparing 'AEM': >> * checking DESCRIPTION meta-information ... OK >> * cleaning src >> * removing junk files >> * checking for LF line-endings in source and make files >> * checking for empty or unneeded directories >> * building binary distribution >> /var/folders/+5/+5Ch2A6BEb4+iULWkg5XEU+++TI/-Tmp-/Rinst965351719 >> * Installing *source* package 'AEM' ... >> ** libs >> ** arch - i386 >> gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk >> -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp >> -I/Library/Frameworks/R.framework/Resources/include >> -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 - >> fPIC >> -g -O2 -march=nocona -c buildbinary.c -o buildbinary.o >> gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk >> -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib >> -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 - >> undefined >> dynamic_lookup -single_module -multiply_defined suppress -L/usr/ >> local/lib -o >> AEM.so buildbinary.o -F/Library/Frameworks/R.framework/.. - >> framework R >> ld: warning, duplicate dylib >> /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/libgcc_s.1.dylib >> ** arch - ppc >> gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk >> -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp >> -I/Library/Frameworks/R.framework/Resources/include >> -I/Library/Frameworks/R.framework/Resources/include/ppc >> -I/usr/local/include -fPIC -g -O2 -c buildbinary.c -o >> buildbinary.o >> gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk >> -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib >> -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 - >> undefined >> dynamic_lookup -single_module -multiply_defined suppress -L/usr/ >> local/lib -o >> AEM.so buildbinary.o -F/Library/Frameworks/R.framework/.. - >> framework R >> ld: warning, duplicate dylib >> /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/libgcc_s.1.dylib >> ld: in /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/libstdc++. >> 6.dylib, file >> is not of required architecture >> collect2: ld returned 1 exit status >> make: *** [AEM.so] Error 1 >> chmod: >> /var/folders/+5/+5Ch2A6BEb4+iULWkg5XEU+++TI/-Tmp-/Rinst965351719/AEM/ >> libs/ppc/*: >> No such file or directory >> ERROR: compilation failed for package 'AEM' >> ** Removing >> '/var/folders/+5/+5Ch2A6BEb4+iULWkg5XEU+++TI/-Tmp-/Rinst965351719/ >> AEM' >> ERROR >> * installation failed >> >> >> My knowledge of the UNIX code and the terminal is limited, so please >> be >> gentle ! >> >> Thanks in advance for any help. >> >> Have a nice day ! >> >> Guillaume Blanchet >> PhD. candidate >> University of Alberta >> >> [[alternative HTML version deleted]] >> >> >> >> ------------------------------ >> >> _______________________________________________ >> R-SIG-Mac mailing list >> [email protected] >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> >> >> End of R-SIG-Mac Digest, Vol 59, Issue 8 >> **************************************** > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
