Hi ! Thanks Simon,
Removing 3rd party compilers solved the problem !! Have a nice day ! Guillaume 2008/1/20, Simon Urbanek <[EMAIL PROTECTED]>: > > Guillaume, > > although your package may be ok, your system is not. You have > apparently broken libraries in /usr/local/lib that override your > system libraries and thus cause your package to fail to build (from > the output it's at least libstdc++). This is likely from some broken > local compiler installations. I strongly recommend removing all 3rd > party compilers, especially from /usr/local, and install only the GNU > Fortran that R supplies (if needed). > > Cheers, > Simon > > > On Jan 14, 2008, at 10:42 PM, Guillaume Blanchet wrote: > > > Hi all ! > > > > I just installed Mac OS X 10.5.1 on my Intel MacBook Pro. Since I > > have my > > personal packages that I build and modify every so often I also > > installed > > Xcode 3. My packages contain either some C code, some Fortran code > > or both. > > > > However, I can not build a binary of my package, which I know to be > > error-free since they were running without any bugs when I was > > running Tiger > > (Mac OS 10.4.11). > > > > The message that is sent to me when I launch the command "R CMD build > > --binary AEM" (AEM being the name of my package) in the terminal is: > > > > > > macintosh:AEM Package ti-guiblanc$ R CMD build --binary AEM > > * checking for file 'AEM/DESCRIPTION' ... OK > > * preparing 'AEM': > > * checking DESCRIPTION meta-information ... OK > > * cleaning src > > * removing junk files > > * checking for LF line-endings in source and make files > > * checking for empty or unneeded directories > > * building binary distribution > > /var/folders/+5/+5Ch2A6BEb4+iULWkg5XEU+++TI/-Tmp-/Rinst965351719 > > * Installing *source* package 'AEM' ... > > ** libs > > ** arch - i386 > > gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk > > -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp > > -I/Library/Frameworks/R.framework/Resources/include > > -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 - > > fPIC > > -g -O2 -march=nocona -c buildbinary.c -o buildbinary.o > > gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk > > -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib > > -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 - > > undefined > > dynamic_lookup -single_module -multiply_defined suppress -L/usr/ > > local/lib -o > > AEM.so buildbinary.o -F/Library/Frameworks/R.framework/.. - > > framework R > > ld: warning, duplicate dylib > > /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/libgcc_s.1.dylib > > ** arch - ppc > > gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk > > -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp > > -I/Library/Frameworks/R.framework/Resources/include > > -I/Library/Frameworks/R.framework/Resources/include/ppc > > -I/usr/local/include -fPIC -g -O2 -c buildbinary.c -o > > buildbinary.o > > gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk > > -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib > > -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 - > > undefined > > dynamic_lookup -single_module -multiply_defined suppress -L/usr/ > > local/lib -o > > AEM.so buildbinary.o -F/Library/Frameworks/R.framework/.. - > > framework R > > ld: warning, duplicate dylib > > /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/libgcc_s.1.dylib > > ld: in /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/libstdc++. > > 6.dylib, file > > is not of required architecture > > collect2: ld returned 1 exit status > > make: *** [AEM.so] Error 1 > > chmod: > > /var/folders/+5/+5Ch2A6BEb4+iULWkg5XEU+++TI/-Tmp-/Rinst965351719/AEM/ > > libs/ppc/*: > > No such file or directory > > ERROR: compilation failed for package 'AEM' > > ** Removing > > '/var/folders/+5/+5Ch2A6BEb4+iULWkg5XEU+++TI/-Tmp-/Rinst965351719/AEM' > > ERROR > > * installation failed > > > > > > My knowledge of the UNIX code and the terminal is limited, so please > > be > > gentle ! > > > > Thanks in advance for any help. > > > > Have a nice day ! > > > > Guillaume Blanchet > > PhD. candidate > > University of Alberta > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > R-SIG-Mac mailing list > > [email protected] > > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > > > > > [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
