Thanks to all for your fast answer, this list is amazing! Graham's answer was perfectly satisfactory, once onnly that eliminated the warning.
Thanks to all again. Agus 2012/5/23 Graham Slater <gsla...@ucla.edu> > This doesn't indicate that they don't match - rather it's telling you that > there are no names associated with the tip data (as tp$temperature is just > a vector of numerical values) and so it is assuming that those values are > in the same order as the tip labels in the tree. > > Assuming the taxon names are the rownames of your dataframe tp, try > > >> fitContinuous(phy = tree, data = tp$temperature, model="BM", > data.names = rownames(tp) > > that should work without a warning. If your tip data are in the same order > as the tip labels, the model output won't change. If they're not..... > > Graham > > > On May 23, 2012, at 1:16 PM, Agus Camacho wrote: > > > Dear all, > > > > fitcontinuous is giving me a warning generally related to non > > correspondence between tree tips and data. However name.check and the > tree > > tips seems ok. > > > > Anybody has a hint on this? > > > > Thanks in advance. > > Agus > > > >> name.check(tree, tp)[1] "OK"> BMfit <- fitContinuous(tree, > tp$temperature, model="BM")Warning: no tip labels, order assumed to be the > same as in the tree > > Fitting BM model:> tree > > Phylogenetic tree with 11 tips and 10 internal nodes. > > > > Tip labels: > > C.leiolepis, C.nicterus, C.sinebrachiatus, S.catimbau, N.ablephara, > > P.erythrocercus, ... > > Node labels: > > 1, 2, 3, 4, 5, 6, ... > > > > Rooted; includes branch lengths. > > > > > > > > -- > > Agustín Camacho Guerrero. > > Doutorando em Zoologia. > > Laboratório de Herpetologia, Departamento de Zoologia, Instituto de > > Biociências, USP. > > Rua do Matão, trav. 14, nº 321, Cidade Universitária, > > São Paulo - SP, CEP: 05508-090, Brasil. > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > R-sig-phylo mailing list > > R-sig-phylo@r-project.org > > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > > ------------------------------------------------------------ > Graham Slater Ph. D. > Department of Ecology and Evolutionary Biology > University of California, Los Angeles > 610 Charles E. Young Drive South > Los Angeles, CA 90095-1606 > > (424) 442-4348 > gsla...@ucla.edu > www.eeb.ucla.edu/gslater > > > > > > > > > -- Agustín Camacho Guerrero. Doutorando em Zoologia. Laboratório de Herpetologia, Departamento de Zoologia, Instituto de Biociências, USP. Rua do Matão, trav. 14, nº 321, Cidade Universitária, São Paulo - SP, CEP: 05508-090, Brasil. [[alternative HTML version deleted]]
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