Hi Kent, On Wed, 5 May 2021 at 17:54, Kent Johnson <kjohn...@akoyabio.com> wrote: > > Hi, > > I am a maintainer of this package - https://github.com/akoyabio/rtree - > originally inspired by this example - > https://gallery.rcpp.org/articles/Rtree-examples/. This package wraps the > rtree implementation from BH 1.7.2.0-3 to provide fast methods for finding > points nearby to other points in large data sets. > > I want to submit the package to CRAN but I have a CMD CHECK warning on > Windows that I can't resolve. > > Running CMD CHECK from GitHub Actions, on Microsoft Windows Server 2019 > 10.0.17763, I get this error message: > > -- R CMD check results ---------------------------------------- rtree 0.2.0 > ---- > Duration: 1m 42.7s > > > checking whether package 'rtree' can be installed ... WARNING > See below... > > 0 errors v | 1 warning x | 0 notes v > Error: Error: R CMD check found WARNINGs > Execution halted > Error: Process completed with exit code 1. > > The full output is here: > https://github.com/akoyabio/rtree/runs/2502841486?check_suite_focus=true > The message says "See below..." but there is nothing below?
Below I see this: * checking whether package 'rtree' can be installed ... WARNING Found the following significant warnings: D:/a/_temp/Library/BH/include/boost/geometry/index/detail/varray_detail.hpp:544:13: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'struct std::pair<boost::geometry::model::point<double, 2, boost::geometry::cs::cartesian>, unsigned int>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] D:/a/_temp/Library/BH/include/boost/geometry/index/detail/varray_detail.hpp:578:13: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'struct std::pair<double, boost::variant<boost::geometry::index::detail::rtree::variant_leaf<std::pair<boost::geometry::model::point<double, 2, boost::geometry::cs::cartesian>, unsigned int>, boost::geometry::index::quadratic<16>, boost::geometry::model::box<boost::geometry::model::point<double, 2, boost::geometry::cs::cartesian> >, boost::geometry::index::detail::rtree::allocators<boost::container::new_allocator<std::pair<boost::geometry::model::point<double, 2, boost::geometry::cs::cartesian>, unsigned int> >, std::pair<boost::geometry::model::point<double, 2, boost::geometry::cs::cartesian>, unsigned int>, boost::geometry::index::quadratic<16>, boost::geometry::model::box<boost::geometry::model::point<double, 2, boost::geometry::cs::cartesian> >, boost::geometry::index::detail::rtree::node_variant_static_tag>, boost::geometry::index::detail::rtree::node_variant_static_tag>, boost::geometry::index::detail::rtree::variant_internal_node<std::pair<boost::geometry::model::point<double, 2, boost::geometry::cs::cartesian>, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box<boost::geometry::model::point<double, 2, boost::geometry::cs::cartesian> >, boost::geometry::index::detail::rtree::allocators<boost::container::new_allocator<std::pair<boost::geometry::model::point<double, 2, boost::geometry::cs::cartesian>, unsigned int> >, std::pair<boost::geometry::model::point<double, 2, boost::geometry::cs::cartesian>, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box<boost::geometry::model::point<double, 2, boost::geometry::cs::cartesian> >, boost::geometry::index::detail::rtree::node_variant_static_tag>, boost::geometry::index::detail::rtree::node_variant_static_tag> >*>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] D:/a/_temp/Library/BH/include/boost/geometry/index/detail/varray_detail.hpp:237:13: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'struct std::pair<boost::geometry::model::point<double, 2, boost::geometry::cs::cartesian>, unsigned int>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] See 'D:/a/rtree/rtree/check/rtree.Rcheck/00install.out' for details. And even more details if you download the artifacts of your build and review that file. So it's a Boost thing, and there's probably nothing you can do about it beyond talking to CRAN. There are packages on CRAN with these warnings. > Running on my local Windows 10 PC I get this warning and a note: > > -- R CMD check results ---------------------------------------- rtree 0.2.0 > ---- > Duration: 1m 2.2s > > > checking whether package 'rtree' can be installed ... WARNING > See below... > > > checking compiled code ... NOTE > Note: information on .o files for x64 is not available > File 'C:/Research/rtree.Rcheck/rtree/libs/x64/rtree.dll': > Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) > Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) > Found 'printf', possibly from 'printf' (C) This is problably a false positive. -- Iñaki Úcar _______________________________________________ Rcpp-devel mailing list Rcpp-devel@lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
