On 6 May 2021 at 10:45, Iñaki Ucar wrote: | Hi Kent, | | On Wed, 5 May 2021 at 17:54, Kent Johnson <kjohn...@akoyabio.com> wrote: | > | > Hi, | > | > I am a maintainer of this package - https://github.com/akoyabio/rtree - originally inspired by this example - https://gallery.rcpp.org/articles/Rtree-examples/. This package wraps the rtree implementation from BH 1.7.2.0-3 to provide fast methods for finding points nearby to other points in large data sets. | > | > I want to submit the package to CRAN but I have a CMD CHECK warning on Windows that I can't resolve. | > | > Running CMD CHECK from GitHub Actions, on Microsoft Windows Server 2019 10.0.17763, I get this error message: | > | > -- R CMD check results ---------------------------------------- rtree 0.2.0 ---- | > Duration: 1m 42.7s | > | > > checking whether package 'rtree' can be installed ... WARNING | > See below... | > | > 0 errors v | 1 warning x | 0 notes v | > Error: Error: R CMD check found WARNINGs | > Execution halted | > Error: Process completed with exit code 1. | > | > The full output is here: https://github.com/akoyabio/rtree/runs/2502841486?check_suite_focus=true | > The message says "See below..." but there is nothing below? | | Below I see this: | | * checking whether package 'rtree' can be installed ... WARNING | Found the following significant warnings: | | D:/a/_temp/Library/BH/include/boost/geometry/index/detail/varray_detail.hpp:544:13: | warning: 'void* memcpy(void*, const void*, size_t)' writing to an | object of type 'struct std::pair<boost::geometry::model::point<double, | 2, boost::geometry::cs::cartesian>, unsigned int>' with no trivial | copy-assignment; use copy-assignment or copy-initialization instead | [-Wclass-memaccess] | | D:/a/_temp/Library/BH/include/boost/geometry/index/detail/varray_detail.hpp:578:13: | warning: 'void* memcpy(void*, const void*, size_t)' writing to an | object of type 'struct std::pair<double, | boost::variant<boost::geometry::index::detail::rtree::variant_leaf<std::pair<boost::geometry::model::point<double, | 2, boost::geometry::cs::cartesian>, unsigned int>, | boost::geometry::index::quadratic<16>, | boost::geometry::model::box<boost::geometry::model::point<double, 2, | boost::geometry::cs::cartesian> >, | boost::geometry::index::detail::rtree::allocators<boost::container::new_allocator<std::pair<boost::geometry::model::point<double, | 2, boost::geometry::cs::cartesian>, unsigned int> >, | std::pair<boost::geometry::model::point<double, 2, | boost::geometry::cs::cartesian>, unsigned int>, | boost::geometry::index::quadratic<16>, | boost::geometry::model::box<boost::geometry::model::point<double, 2, | boost::geometry::cs::cartesian> >, | boost::geometry::index::detail::rtree::node_variant_static_tag>, | boost::geometry::index::detail::rtree::node_variant_static_tag>, | boost::geometry::index::detail::rtree::variant_internal_node<std::pair<boost::geometry::model::point<double, | 2, boost::geometry::cs::cartesian>, unsigned int>, | boost::geometry::index::quadratic<16, 4>, | boost::geometry::model::box<boost::geometry::model::point<double, 2, | boost::geometry::cs::cartesian> >, | boost::geometry::index::detail::rtree::allocators<boost::container::new_allocator<std::pair<boost::geometry::model::point<double, | 2, boost::geometry::cs::cartesian>, unsigned int> >, | std::pair<boost::geometry::model::point<double, 2, | boost::geometry::cs::cartesian>, unsigned int>, | boost::geometry::index::quadratic<16, 4>, | boost::geometry::model::box<boost::geometry::model::point<double, 2, | boost::geometry::cs::cartesian> >, | boost::geometry::index::detail::rtree::node_variant_static_tag>, | boost::geometry::index::detail::rtree::node_variant_static_tag> >*>' | with no trivial copy-assignment; use copy-assignment or | copy-initialization instead [-Wclass-memaccess] | | D:/a/_temp/Library/BH/include/boost/geometry/index/detail/varray_detail.hpp:237:13: | warning: 'void* memcpy(void*, const void*, size_t)' writing to an | object of type 'struct std::pair<boost::geometry::model::point<double, | 2, boost::geometry::cs::cartesian>, unsigned int>' with no trivial | copy-assignment; use copy-assignment or copy-initialization instead | [-Wclass-memaccess] | | See 'D:/a/rtree/rtree/check/rtree.Rcheck/00install.out' for details. | | And even more details if you download the artifacts of your build and | review that file. So it's a Boost thing, and there's probably nothing | you can do about it beyond talking to CRAN. There are packages on CRAN | with these warnings.
But for me it actually failed to build at - RHub - win-builder r-release - win-builder r-devel when I submitted an unchanged tarball (with me as maintainer to get the result). So there may be more going on. Could just be a setup issue which happens at RHub and win-builder. But Boost Geometry may be a more dicey part of Boost. | > Running on my local Windows 10 PC I get this warning and a note: | > | > -- R CMD check results ---------------------------------------- rtree 0.2.0 ---- | > Duration: 1m 2.2s | > | > > checking whether package 'rtree' can be installed ... WARNING | > See below... | > | > > checking compiled code ... NOTE | > Note: information on .o files for x64 is not available | > File 'C:/Research/rtree.Rcheck/rtree/libs/x64/rtree.dll': | > Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) | > Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) | > Found 'printf', possibly from 'printf' (C) | | This is problably a false positive. Maybe. Maybe not. It does not seem to reproduce on Linux. Dirk -- https://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org _______________________________________________ Rcpp-devel mailing list Rcpp-devel@lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
