I don't think it's a question of upgrade, it's a question of actually installing lapack libs. Simply running yum install lapack lapack-devel blas blas-devel should take care of things. I have compiled RDKit on Centos 4, CentOs 5 and Fedora 8 and 9.
Cheers, Igor On Fri, 2009-03-27 at 17:52 +0000, George Oakman wrote: > Hi, > > Thanks. I guess the easiest would be to upgrade my Red Hat > distribution, which would come with a more recent gcc and BLAS > library. Unfortunately I can't do that as it is my current 'minimum > requirement' build machine. > > I'm on Red Hat Enterprise Linux 4 (Nahant, 2005) with Linux 2.6.9 and > gcc 3.4.6 > > Has anyone managed to compile the RDKit on a similar configuration? I > am trying to compile the Q4-2008 release by the way. > > Many thanks, > > George. > > > > Date: Fri, 27 Mar 2009 05:45:05 +0100 > > Subject: Re: [Rdkit-discuss] Compiling on Red Hat linux > > From: [email protected] > > To: [email protected] > > CC: [email protected] > > > > On Thu, Mar 26, 2009 at 6:28 PM, George Oakman <[email protected]> > wrote: > > > Hi Greg, > > > > > > Thanks. > > > > > > Do you know which version is required? > > > > > > > As long as it's compatible with your c++ compiler, I don't think it > > should make much difference. > > > > -greg > > > > ______________________________________________________________________ > From: [email protected] > To: [email protected] > Date: Thu, 26 Mar 2009 17:28:06 +0000 > CC: [email protected] > Subject: Re: [Rdkit-discuss] Compiling on Red Hat linux > > Hi Greg, > > Thanks. > > Do you know which version is required? > > > > Date: Thu, 26 Mar 2009 18:12:27 +0100 > > Subject: Re: [Rdkit-discuss] Compiling on Red Hat linux > > From: [email protected] > > To: [email protected] > > CC: [email protected] > > > > Dear George, > > > > I'd suggest you find whatever package exists for Red Hat that > includes > > a pre-built BLAS and LAPACK. I wouldn't recommend building them > > yourself. > > > > -greg > > > > On Thu, Mar 26, 2009 at 4:11 PM, George Oakman <[email protected]> > wrote: > > > Hi all, > > > > > > I decided to take a vacation from Windows for a while and I'm > trying to > > > install the RDKit on a Linux platform (Red Hat). > > > > > > I'm hitting a problem trying to complie libGraphMol.so > > > > > > This is the error coming out of bjam: > > > > > > /usr/bin/ld: skipping incompatible > > > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../libblas.so when > searching > > > for -lblas > > > /usr/bin/ld: skipping incompatible > > > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../libblas.a when > searching for > > > -lblas > > > /usr/bin/ld: skipping incompatible /usr/lib/libblas.so when > searching for > > > -lblas > > > /usr/bin/ld: skipping incompatible /usr/lib/libblas.a when > searching for > > > -lblas > > > > > > It looks like my version of libblas is incompatible. How can I > recompile a > > > compatible version? > > > > > > Can I use the files in $RDKit/External? > > > > > > It looks like $RDKit/External/Lapack only has the win32 library. > > > > > > Any help would be greatly appreciated. > > > > > > Thank you. > > > > > > George. > > > > > > > > > > > > ________________________________ > > > Beyond Hotmail — see what else you can do with Windows Live. Find > out more! > > > > ------------------------------------------------------------------------------ > > > > > > _______________________________________________ > > > Rdkit-discuss mailing list > > > [email protected] > > > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss > > > > > > > > > > ______________________________________________________________________ > Share your photos with Windows Live Photos – Free. Try it Now! > ------------------------------------------------------------------------------ > _______________________________________________ > Rdkit-discuss mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
