Ok, I had to run the following after unzipping boost:

./bootstrap.sh --with-libraries=python --prefix=/home/user/Tools/cinfony/tree
./bjam install

There was no need to download or install bjam separately. The RDKit
build was then configured as follows:

   cmake .. -DCMAKE_INSTALL_PREFIX=/home/user/Tools/cinfony/tree
-DBoost_INCLUDE_DIR=/home/user/Tools/cinfony/tree/include

- Noel

On 31 March 2010 17:16, Greg Landrum <[email protected]> wrote:
> Hi Noel,
>
> Looks like the problem with the build instructions is that I assume a
> pre-built version of bjam; bad assumption.
>
> Your best bet is probably to follow the build instructions for boost
> that are in the boost docs:
> http://www.boost.org/doc/libs/1_42_0/more/getting_started/unix-variants.html#easy-build-and-install
>
> you only need the python library, so don't worry about building everything.
>
> Note: I haven't tested the RDKit with boost 1.42, but I don't
> anticipate any major problems.
>
> -greg
>
> On Wed, Mar 31, 2010 at 8:46 AM, Noel O'Boyle <[email protected]> wrote:
>> Hello Greg,
>>
>> I'm trying to follow the instructions at
>> http://code.google.com/p/rdkit/wiki/BuildingWithCmake on an Ubuntu
>> 9.04 system.
>>
>> (1) I downloaded a boost source version.
>> (http://sourceforge.net/projects/boost/files/boost/1.42.0/boost_1_42_0.tar.gz/download)
>> (2) I extracted it and tried "bjam --with-python release install", but
>> I don't have bjam.
>> (3) I downloaded ../boost-jam-3.1.18. It said there was a precompiled
>> version, but there wasn't so I compiled it.
>> (4) I run "bjam --with-python release install", but got
>>
>> """u...@ubuntu904desktop:~/Tools/cinfony/boost_1_42_0$
>> ../boost-jam-3.1.18/bin.linuxx86/bjam
>>
>> Unable to load Boost.Build: could not find build system.
>> ---------------------------------------------------------
>> /home/user/Tools/cinfony/boost_1_42_0/boost-build.jam attempted to
>> load the build system by invoking
>>
>>   'boost-build tools/build/v2 ;'
>>
>> but we were unable to find "bootstrap.jam" in the specified directory
>> or in BOOST_BUILD_PATH (searching
>> /home/user/Tools/cinfony/boost_1_42_0/tools/build/v2,
>> /usr/share/boost-build).
>>
>> Please consult the documentation at 'http://www.boost.org'."""
>>
>> What am I doing wrong? Were you using the same versions?
>>
>> - Noel
>>
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proactively, and fine-tune applications for parallel performance.
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