Hi, is it possible that you use cairo (canvas) and not agg (canvas) ? Maybe I made an error with the "cairo colours".
In case you use cairo apply the following patch and test again (I'm not able to test it right now). --- rdkit/Chem/Draw/cairoCanvas.py (Revision 1467) +++ rdkit/Chem/Draw/cairoCanvas.py (Arbeitskopie) @@ -100,7 +100,7 @@ def convertColor(color): - color = (int(color[0]*255),int(color[1]*255),int(color[2]*255)) + color = (color[0],color[1],color[2]) #whole function overfluous return color def _getLinePoints(p1,p2,dash): regards Uwe Am Donnerstag, den 29.07.2010, 11:09 +0200 schrieb Peter Schmidtke: > Ah, > > interesting, I thought it was intended to be so :) > > I use the following code : > > import rdkit.Chem as chem, rdkit.Chem.Draw as chemDraw > > ligand=chem.MolFromSmiles(smilesCode) > > if ligand: > chemDraw.MolToImageFile(ligand,tmpdir+os.sep+"test.gif", size=(250, > 98), kekulize=True, wedgeBonds=True) > > > > I did not try on other systems, but this happens on a opensuse 11.1 64 bit, > with rdkit q4 2009 and boost 1.41 > > I'll check on my mac as soon as I get rdkit installed if that problems occurs > there also :) > > Cheers. > > Peter > > > On 29/07/2010, at 11:03, Greg Landrum wrote: > > > On Thu, Jul 29, 2010 at 9:23 AM, Peter Schmidtke <[email protected]> wrote: > >> Hey all, > >> > >> I always wondered, why colours in the 2D depictions in Rdkit are red for > >> nitrogens and blue for oxygens? > >> > > > > I would also wonder if I saw something like that. It doesn't happen > > for me though. How are you generating depictions? > > > > -greg > > Peter Schmidtke > > ----------------- > PhD Student > Department of Physical Chemistry > School of Pharmacy > University of Barcelona > Barcelona, Spain > > > ------------------------------------------------------------------------------ > The Palm PDK Hot Apps Program offers developers who use the > Plug-In Development Kit to bring their C/C++ apps to Palm for a share > of $1 Million in cash or HP Products. Visit us here for more details: > http://p.sf.net/sfu/dev2dev-palm > _______________________________________________ > Rdkit-discuss mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss ------------------------------------------------------------------------------ The Palm PDK Hot Apps Program offers developers who use the Plug-In Development Kit to bring their C/C++ apps to Palm for a share of $1 Million in cash or HP Products. Visit us here for more details: http://p.sf.net/sfu/dev2dev-palm _______________________________________________ Rdkit-discuss mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
