Dear Kirk, Thank you so much! I'm in the process of compiling gcc-4.5.1 right now, having got gmp, mpc, and mpfr built with the older version of gcc. Your instructions have to be preserved for the others, I can't believe I'm the only one using CentOs/RHEL on a server/compute node.
Greg, don't take it as a slam but compiling the Linux kernel is a walk in a park compared to a recent RDkit. I'm working on it second day and I'm barely half-way through the process of installing dependencies. Even without python the version of gcc which comes with CentOs 5 (4.1.2) cannot compile RDKit. On the other hand the RPM packages for Fedora have been painless to install, how nice it would be to have the RDKit RPMs for CentOs! Best, Igor On Wed, 2011-01-05 at 17:41 -0500, Robert DeLisle wrote: > I have been able to reproducibly build RDKit on CentOS 5.5, but it > required a significant amount of updating of the build components. > The attached walk-through script should get you there. I do not > recall ever seeing that particular error, however. > > -Kirk > > > > > On Wed, Jan 5, 2011 at 1:15 PM, Igor Filippov [Contr] > <[email protected]> wrote: > Dear All, > > Has anyone successfully compiled RDKit on CentOs 5? I'm > running into the > following error message: > [ 15%] Building CXX object > > > Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o > > > /root/RDKit_2010_09_1/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:14:31: > error: numpy/arrayobject.h: No such file or directory > > On CentOs 5 arrayobject.h is part of python-numeric package > and it's > located in: > /usr/include/python2.4/Numeric/arrayobject.h > > I'm attempting to compile RDKit_2010_09_1, using boost version > 1.39.0, > x86_64 system. > > Regards, > Igor > > > > > > > ------------------------------------------------------------------------------ > Learn how Oracle Real Application Clusters (RAC) One Node > allows customers > to consolidate database storage, standardize their database > environment, and, > should the need arise, upgrade to a full multi-node Oracle RAC > database > without downtime or disruption > http://p.sf.net/sfu/oracle-sfdevnl > _______________________________________________ > Rdkit-discuss mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss > ------------------------------------------------------------------------------ Learn how Oracle Real Application Clusters (RAC) One Node allows customers to consolidate database storage, standardize their database environment, and, should the need arise, upgrade to a full multi-node Oracle RAC database without downtime or disruption http://p.sf.net/sfu/oracle-sfdevnl _______________________________________________ Rdkit-discuss mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
