The commands report following info (I recompiled
to /home/chupvl/scisoft/RDKit_2012_06_1/ - this path).
/home/chupvl/scisoft/RDKit_2012_06_1/rdkit/rdBase.so
linux-vdso.so.1 => (0x00007fff45a96000)
libSmilesParse.so.1 =>
/home/chupvl/scisoft/RDKit_2012_06_1/lib/libSmilesParse.so.1
(0x00007ff162648000)
libSubstructMatch.so.1 =>
/home/chupvl/scisoft/RDKit_2012_06_1/lib/libSubstructMatch.so.1
(0x00007ff162435000)
libGraphMol.so.1 =>
/home/chupvl/scisoft/RDKit_2012_06_1/lib/libGraphMol.so.1
(0x00007ff16212a000)
libRDGeneral.so.1 =>
/home/chupvl/scisoft/RDKit_2012_06_1/lib/libRDGeneral.so.1
(0x00007ff161ee9000)
libRDBoost.so.1 =>
/home/chupvl/scisoft/RDKit_2012_06_1/lib/libRDBoost.so.1
(0x00007ff161ce6000)
libpython2.7.so.1.0 => /usr/lib/libpython2.7.so.1.0 (0x00007ff1617c4000)
libboost_python-py27.so.1.46.1 => /usr/lib/libboost_python-py27.so.1.46.1
(0x00007ff161578000)
libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6
(0x00007ff161278000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007ff160f7d000)
libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007ff160d67000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007ff1609aa000)
libRDGeometryLib.so.1 =>
/home/chupvl/scisoft/RDKit_2012_06_1/lib/libRDGeometryLib.so.1
(0x00007ff16078a000)
libssl.so.1.0.0 => /lib/x86_64-linux-gnu/libssl.so.1.0.0
(0x00007ff16052e000)
libcrypto.so.1.0.0 => /lib/x86_64-linux-gnu/libcrypto.so.1.0.0
(0x00007ff160166000)
libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007ff15ff4e000)
libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0
(0x00007ff15fd31000)
libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007ff15fb2d000)
libutil.so.1 => /lib/x86_64-linux-gnu/libutil.so.1 (0x00007ff15f929000)
/lib64/ld-linux-x86-64.so.2 (0x00007ff162b87000)
libDataStructs.so.1 =>
/home/chupvl/scisoft/RDKit_2012_06_1/lib/libDataStructs.so.1
(0x00007ff15f64a000)
Thank's!
On Fri, Aug 17, 2012 at 1:42 PM, Greg Landrum <[email protected]>wrote:
> oops, hit send to soon.
>
> On Fri, Aug 17, 2012 at 7:38 PM, Greg Landrum <[email protected]>
> wrote:
> > Dear Vladimir,
> >
> > On Fri, Aug 17, 2012 at 6:56 PM, Vladimir Chupakhin <[email protected]>
> wrote:
> >> I have added this into the .bashrc
> >>
> >> export RDBASE=/home/chupvl/scisoft/rdkit/
> >> export PYTHONPATH=/home/chupvl/scisoft/rdkit/:/usr/include/python2.7/
> >> export LD_LIBRARY_PATH=/home/chupvl/scisoft/rdkit/lib/
> >>
> >> but actually received even more Failed messages.
> >
> > The error messages you are getting are strange and seem to be pointing
> > to an older version of the RDKit being found.
> >
> > Could it be that you have either an older distribution somewhere or
> > that you forgot to do "make install" after you built the code?
>
> you can check this by doing:
> ldd $RDBASE/rdkit/Chem/rdchem.so
> and:
> python -c 'from rdkit import rdBase; print rdBase.__file__'
>
> -greg
>
--
Vladimir Chupakhin,
Boston, MA, USA
tel: +1-617-943-9710
LinkedIN: http://www.linkedin.com/in/chupvl
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