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[Rdkit-discuss] Isotope labeling
Eduardo Mayo
Re: [Rdkit-discuss] Isotope labeling
Paolo Tosco
[Rdkit-discuss] NeurIPS 2020 Workshop on Machine Learning for Molecules: Call for Papers
Jennifer Wei via Rdkit-discuss
[Rdkit-discuss] Display Molecules within IPython Console
Scalfani, Vincent
Re: [Rdkit-discuss] Display Molecules within IPython Console
Greg Landrum
Re: [Rdkit-discuss] Display Molecules within IPython Console
Ivan Tubert-Brohman
Re: [Rdkit-discuss] Display Molecules within IPython Console
Scalfani, Vincent
[Rdkit-discuss] Embedding planar ring with Hs
Puck van Gerwen
[Rdkit-discuss] result discrepancy between SubstructLibrary, PatternFingerprint comparison and HasSubstructMatch
Thomas Evangelidis
Re: [Rdkit-discuss] result discrepancy between SubstructLibrary, PatternFingerprint comparison and HasSubstructMatch
Greg Landrum
Re: [Rdkit-discuss] result discrepancy between SubstructLibrary, PatternFingerprint comparison and HasSubstructMatch
Greg Landrum
Re: [Rdkit-discuss] result discrepancy between SubstructLibrary, PatternFingerprint comparison and HasSubstructMatch
Thomas Evangelidis
[Rdkit-discuss] appending new rows in dataframe with stereo-isomers
Marawan Hussien via Rdkit-discuss
Re: [Rdkit-discuss] appending new rows in dataframe with stereo-isomers
Ines Smit
[Rdkit-discuss] c++ atomic lifetime
Jason Biggs
Re: [Rdkit-discuss] c++ atomic lifetime
dmaziuk via Rdkit-discuss
Re: [Rdkit-discuss] c++ atomic lifetime
Nils Weskamp
Re: [Rdkit-discuss] c++ atomic lifetime
dmaziuk via Rdkit-discuss
Re: [Rdkit-discuss] c++ atomic lifetime
Dan Nealschneider
Re: [Rdkit-discuss] c++ atomic lifetime
David Cosgrove
Re: [Rdkit-discuss] c++ atomic lifetime
Jason Biggs
Re: [Rdkit-discuss] c++ atomic lifetime
dmaziuk via Rdkit-discuss
Re: [Rdkit-discuss] c++ atomic lifetime
Jason Biggs
Re: [Rdkit-discuss] c++ atomic lifetime
Greg Landrum
Re: [Rdkit-discuss] c++ atomic lifetime
Paul Emsley
Re: [Rdkit-discuss] c++ atomic lifetime
dmaziuk via Rdkit-discuss
Re: [Rdkit-discuss] c++ atomic lifetime
Paolo Tosco
[Rdkit-discuss] How to set rdMolStandardize.CleanupParameters.maxTautomer for tautomer canonicalization
Fiorella Ruggiu
Re: [Rdkit-discuss] How to set rdMolStandardize.CleanupParameters.maxTautomer for tautomer canonicalization
Paolo Tosco
Re: [Rdkit-discuss] How to set rdMolStandardize.CleanupParameters.maxTautomer for tautomer canonicalization
Fiorella Ruggiu
[Rdkit-discuss] 2D coord for hydrogens
Mark Mackey
Re: [Rdkit-discuss] 2D coord for hydrogens
Fiorella Ruggiu
Re: [Rdkit-discuss] 2D coord for hydrogens
Paolo Tosco
Re: [Rdkit-discuss] 2D coord for hydrogens
Mark Mackey
[Rdkit-discuss] EmbedMolecule and chirality
Tim Dudgeon
[Rdkit-discuss] Valence coding in atom block of SDF files written by RDKit
Jean-Marc Nuzillard
[Rdkit-discuss] Valence coding in atom block of SDF files written by RDKit
Paolo Tosco
Re: [Rdkit-discuss] Valence coding in atom block of SDF files written by RDKit
Jean-Marc Nuzillard
[Rdkit-discuss] Need help with MMFFOptimize
ITS RDC
Re: [Rdkit-discuss] Need help with MMFFOptimize
Paolo Tosco
[Rdkit-discuss] Keeping 3D coordinates from sdf file
Puck van Gerwen
Re: [Rdkit-discuss] Keeping 3D coordinates from sdf file
Paolo Tosco
Re: [Rdkit-discuss] Keeping 3D coordinates from sdf file
Puck van Gerwen
Re: [Rdkit-discuss] Keeping 3D coordinates from sdf file
Sunhwan Jo
Re: [Rdkit-discuss] Keeping 3D coordinates from sdf file
Paolo Tosco
Re: [Rdkit-discuss] Keeping 3D coordinates from sdf file
Puck van Gerwen
[Rdkit-discuss] Atom Order Canonicalization
Jeffrey Van santen
Re: [Rdkit-discuss] Atom Order Canonicalization
Paolo Tosco
Re: [Rdkit-discuss] Atom Order Canonicalization
Jeffrey Van santen
[Rdkit-discuss] The difference between rdkit.Chem.Descriptors and rdkit.Chem.rdMolDescriptors
Hao Zheng via Rdkit-discuss
[Rdkit-discuss] Registration for the 2020 virtual RDKit UGM
Greg Landrum
[Rdkit-discuss] Matching SMILES to SMARTS
Burbidge Robert (Hyper Recruitment Solutions Limited)
Re: [Rdkit-discuss] Matching SMILES to SMARTS
Greg Landrum
Re: [Rdkit-discuss] [External] Re: Matching SMILES to SMARTS
Burbidge Robert (Hyper Recruitment Solutions Limited)
[Rdkit-discuss] get ionic bonds
Behnaz Hoseyni
Re: [Rdkit-discuss] get ionic bonds
Greg Landrum
Re: [Rdkit-discuss] get ionic bonds
Greg Landrum
[Rdkit-discuss] Num .Of Benzene rings and Substitents
Raghuram Srinivas
Re: [Rdkit-discuss] Num .Of Benzene rings and Substitents
Taka Seri
[Rdkit-discuss] RDkit: While converting sdf file to fingerprint, facing several error
Pitanti Chalowa
Re: [Rdkit-discuss] RDkit: While converting sdf file to fingerprint, facing several error
Greg Landrum
Re: [Rdkit-discuss] RDkit: While converting sdf file to fingerprint, facing several error
Pitanti Chalowa
Re: [Rdkit-discuss] RDkit: While converting sdf file to fingerprint, facing several error
dmaziuk via Rdkit-discuss
Re: [Rdkit-discuss] RDkit: While converting sdf file to fingerprint, facing several error
Francois Berenger
Re: [Rdkit-discuss] RDkit: While converting sdf file to fingerprint, facing several error
Greg Landrum
[Rdkit-discuss] mol2 file with atom type that is suitable for amber
Nikhil Maroli
Re: [Rdkit-discuss] mol2 file with atom type that is suitable for amber
Greg Landrum
Re: [Rdkit-discuss] mol2 file with atom type that is suitable for amber
Paul Emsley
[Rdkit-discuss] calculation of spherical harmonics coefficients for 3D molecules?
James T. Metz via Rdkit-discuss
Re: [Rdkit-discuss] calculation of spherical harmonics coefficients for 3D molecules?
Greg Landrum
[Rdkit-discuss] Alignment of alkane chains
Patel, Lara Anne via Rdkit-discuss
[Rdkit-discuss] RDKit installation problem
Sebastián J . Castro
Re: [Rdkit-discuss] RDKit installation problem
David Cosgrove
Re: [Rdkit-discuss] RDKit installation problem
Lukas Pravda
Re: [Rdkit-discuss] RDKit installation problem
Francois Berenger
Re: [Rdkit-discuss] RDKit installation problem
Scalfani, Vincent
[Rdkit-discuss] rdkit installation problem
Moorthy Suresh
[Rdkit-discuss] non-element elements
Brian Peterson
Re: [Rdkit-discuss] non-element elements
Francois Berenger
[Rdkit-discuss] PandasTools.WriteSDF Chirality Bits
Sean Stromberg
Re: [Rdkit-discuss] PandasTools.WriteSDF Chirality Bits
Greg Landrum
Re: [Rdkit-discuss] PandasTools.WriteSDF Chirality Bits
Sean Stromberg
[Rdkit-discuss] Build matching 3D structure
Rafael da Fonseca Lameiro
Re: [Rdkit-discuss] Build matching 3D structure
Tim Dudgeon
[Rdkit-discuss] Manganese ion as a radical?
Lukas Pravda
Re: [Rdkit-discuss] Manganese ion as a radical?
Greg Landrum
[Rdkit-discuss] draw molecule without rescaling or translating
Jason Biggs
Re: [Rdkit-discuss] draw molecule without rescaling or translating
David Cosgrove
Re: [Rdkit-discuss] draw molecule without rescaling or translating
Jason Biggs
[Rdkit-discuss] Detail information of layered fingerprint and pre-defined substructure list
송선빈
Re: [Rdkit-discuss] Detail information of layered fingerprint and pre-defined substructure list
Greg Landrum
[Rdkit-discuss] Define identical atoms in SMARTS pattern
Jan Halborg Jensen
Re: [Rdkit-discuss] Define identical atoms in SMARTS pattern
Ivan Tubert-Brohman
Re: [Rdkit-discuss] Define identical atoms in SMARTS pattern
Hao
Re: [Rdkit-discuss] Define identical atoms in SMARTS pattern
David Cosgrove
Re: [Rdkit-discuss] Define identical atoms in SMARTS pattern
Jan Halborg Jensen
[Rdkit-discuss] [request] Detail information of layered fingerprint and pre-defined substructure list
송선빈
[Rdkit-discuss] Handling PDB files
Tim Dudgeon
Re: [Rdkit-discuss] Handling PDB files
Maciek Wójcikowski
[Rdkit-discuss] Conformer generation
David Turnbull
Re: [Rdkit-discuss] Conformer generation
David Turnbull
Re: [Rdkit-discuss] Conformer generation
Chuang, Kangway
[Rdkit-discuss] Adjusting weight when merging feature maps
Tim Dudgeon
[Rdkit-discuss] RDKit installation for C++
topgunhaides
Re: [Rdkit-discuss] RDKit installation for C++
dmaziuk via Rdkit-discuss
Re: [Rdkit-discuss] RDKit installation for C++
Greg Landrum
Re: [Rdkit-discuss] RDKit installation for C++
Alan Kerstjens Medina
[Rdkit-discuss] RDKit/tautomers
Da'Adoosh Binyamin
Re: [Rdkit-discuss] RDKit/tautomers
Markus Sitzmann
Re: [Rdkit-discuss] RDKit/tautomers
Da'Adoosh Binyamin
[Rdkit-discuss] Saving FeatMap
Tim Dudgeon
[Rdkit-discuss] Unrecognized bond impeding use of Chem.GetShortestPath()
Itastu Da Mac
Re: [Rdkit-discuss] Unrecognized bond impeding use of Chem.GetShortestPath()
Greg Landrum
[Rdkit-discuss] Trouble with Chem.MolFromSmiles
ITS RDC
Re: [Rdkit-discuss] Trouble with Chem.MolFromSmiles
Luke Zulauf via Rdkit-discuss
Re: [Rdkit-discuss] Trouble with Chem.MolFromSmiles
ITS RDC
Re: [Rdkit-discuss] Trouble with Chem.MolFromSmiles
ITS RDC
[Rdkit-discuss] Senior Software Engineer in Cheminformatics job opening at Zymergen
Luke Zulauf via Rdkit-discuss
[Rdkit-discuss] changes in chirality in rdkit?
Bennion, Brian via Rdkit-discuss
Re: [Rdkit-discuss] changes in chirality in rdkit?
Rafal Roszak
Re: [Rdkit-discuss] changes in chirality in rdkit?
Bennion, Brian via Rdkit-discuss
Re: [Rdkit-discuss] changes in chirality in rdkit?
Greg Landrum
Re: [Rdkit-discuss] changes in chirality in rdkit?
Bennion, Brian via Rdkit-discuss
[Rdkit-discuss] Chiral flag when writing molfile
Tim Dudgeon
Re: [Rdkit-discuss] Chiral flag when writing molfile
Greg Landrum
Re: [Rdkit-discuss] Chiral flag when writing molfile
Tim Dudgeon
[Rdkit-discuss] ForwardSDMolSupplier function
ITS RDC
Re: [Rdkit-discuss] ForwardSDMolSupplier function
Greg Landrum
Re: [Rdkit-discuss] ForwardSDMolSupplier function
ITS RDC
Re: [Rdkit-discuss] substructure matching
Quoc-Tuan DO
[Rdkit-discuss] substructure matching
Quoc-Tuan DO
Re: [Rdkit-discuss] [EXTERNAL] substructure matching
Richard Hall
Re: [Rdkit-discuss] substructure matching
Ivan Tubert-Brohman
Re: [Rdkit-discuss] substructure matching
Jan Halborg Jensen
[Rdkit-discuss] Mongo-RDKit Integration!
Christopher Zou
Re: [Rdkit-discuss] Mongo-RDKit Integration!
Patrick Fuller
Re: [Rdkit-discuss] Mongo-RDKit Integration!
Christopher Zou
Re: [Rdkit-discuss] Mongo-RDKit Integration!
Patrick Fuller
Re: [Rdkit-discuss] Mongo-RDKit Integration!
Christoph Steinbeck
Re: [Rdkit-discuss] Mongo-RDKit Integration!
Christopher Zou
[Rdkit-discuss] How to split fused rings?
Fábio Oliveira
Re: [Rdkit-discuss] How to split fused rings?
Greg Landrum
[Rdkit-discuss] ConstrainedEmbed issue
Pavel Polishchuk
Re: [Rdkit-discuss] ConstrainedEmbed issue
Sunhwan Jo
Re: [Rdkit-discuss] ConstrainedEmbed issue
Sereina Riniker
Re: [Rdkit-discuss] ConstrainedEmbed issue
Sunhwan Jo
Re: [Rdkit-discuss] ConstrainedEmbed issue
Pavel Polishchuk
[Rdkit-discuss] Is there someone who manages to compile rdkit Release_2020_03_4 from sources on a Mac?
Francois Berenger
Re: [Rdkit-discuss] Is there someone who manages to compile rdkit Release_2020_03_4 from sources on a Mac?
Giuseppe Marco Randazzo
[Rdkit-discuss] IndexError when generating 2D Pharmacophore Fingerprint
Fábio Oliveira
[Rdkit-discuss] Figure copyright
Paul Zierep via Rdkit-discuss
Re: [Rdkit-discuss] Figure copyright
Greg Landrum
[Rdkit-discuss] Aligning target molecule onto reference molecules
Patel, Lara Anne via Rdkit-discuss
Re: [Rdkit-discuss] Aligning target molecule onto reference molecules
Paolo Tosco
[Rdkit-discuss] chemfp 1.6 and 3.4 releases
Andrew Dalke
Re: [Rdkit-discuss] chemfp 1.6 and 3.4 releases
Andrew Dalke
[Rdkit-discuss] How to convert Isomeric SMILES to canonical SMILES
Goutam Mukherjee
[Rdkit-discuss] rdkit: get reasonable conformation of a small molecule with tri-phosphate from a smiles
Ming Hao
[Rdkit-discuss] Query about creating SMILES string of small chemical fragment
Goutam Mukherjee
Re: [Rdkit-discuss] Query about creating SMILES string of small chemical fragment
Chris Swain via Rdkit-discuss
[Rdkit-discuss] How to add a caption/legend to a 2D SVG depiction of a molecule?
Francois Berenger
Re: [Rdkit-discuss] How to add a caption/legend to a 2D SVG depiction of a molecule?
Francois Berenger
[Rdkit-discuss] Drawing R-groups and custom labels with subscripts
Ivan Khokhlov
[Rdkit-discuss] Using RGroupDecomposition with linking R Groups
James Wallace
[Rdkit-discuss] Issues with Java Compilation
Matthew Lardy
[Rdkit-discuss] Problem with AllChem.EmbedMolecule and/or MMFFOptimizeMolecule
Wojtek Plonka
[Rdkit-discuss] Problem with AllChem.EmbedMolecule and/or MMFFOptimizeMolecule
Wojtek Plonka
Re: [Rdkit-discuss] Problem with AllChem.EmbedMolecule and/or MMFFOptimizeMolecule
Jan Halborg Jensen
Re: [Rdkit-discuss] Problem with AllChem.EmbedMolecule and/or MMFFOptimizeMolecule
Wojtek Plonka
[Rdkit-discuss] About chirality in mol file
Eduardo Mayo
[Rdkit-discuss] PandasTools
Eduardo Mayo
[Rdkit-discuss] Random structure generator based on chemical formula?
theozh
Re: [Rdkit-discuss] Random structure generator based on chemical formula?
Nils Weskamp
Re: [Rdkit-discuss] Random structure generator based on chemical formula?
theozh
Re: [Rdkit-discuss] Random structure generator based on chemical formula?
Jan Halborg Jensen
Re: [Rdkit-discuss] Random structure generator based on chemical formula?
Jan Halborg Jensen
Re: [Rdkit-discuss] Random structure generator based on chemical formula?
theozh
Re: [Rdkit-discuss] Random structure generator based on chemical formula?
Joshua Meyers
Re: [Rdkit-discuss] Random structure generator based on chemical formula?
Jean-Marc Nuzillard
[Rdkit-discuss] trying to figure out what an rdkit warning means
Bennion, Brian via Rdkit-discuss
Re: [Rdkit-discuss] trying to figure out what an rdkit warning means
Greg Landrum
Re: [Rdkit-discuss] trying to figure out what an rdkit warning means
Bennion, Brian via Rdkit-discuss
Re: [Rdkit-discuss] trying to figure out what an rdkit warning means
Greg Landrum
Re: [Rdkit-discuss] trying to figure out what an rdkit warning means
Bennion, Brian via Rdkit-discuss
[Rdkit-discuss] How to calculate Tanimoto similarity score between reactions
??????
Re: [Rdkit-discuss] How to calculate Tanimoto similarity score between reactions
Francois Berenger
Re: [Rdkit-discuss] How to calculate Tanimoto similarity score between reactions
Greg Landrum
[Rdkit-discuss] MolSanitizerError
Eduardo Mayo
[Rdkit-discuss] Removing disconnected hydrogens
Navid Shervani-Tabar
Re: [Rdkit-discuss] Removing disconnected hydrogens
Alan Kerstjens Medina
[Rdkit-discuss] SMART reaction for closing rings
Shani Levi
Re: [Rdkit-discuss] SMART reaction for closing rings
Greg Landrum
Re: [Rdkit-discuss] SMART reaction for closing rings
Shani Levi
[Rdkit-discuss] RMSD between molecules
Eduardo Mayo
Re: [Rdkit-discuss] RMSD between molecules
Max Pinheiro Jr
[Rdkit-discuss] Install RDKit on Portable Apps
Vasos Panagiotopoulos +1-718-939-8595 Bioengineer-Financier
[Rdkit-discuss] CIx position at NIBR Cambridge, US
Stiefl, Nikolaus
[Rdkit-discuss] Removing solvent and ions from dataset
Max Pinheiro Jr
Re: [Rdkit-discuss] Removing solvent and ions from dataset
Francois Berenger
Re: [Rdkit-discuss] Removing solvent and ions from dataset
Pierre-Marie Allard
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