Maybe move the rdkit libs into some folder within apache DocumentRoot?
Did you restart apache after syncing the libraries?
On Tue, Sep 10, 2013 at 3:58 PM, Michał Nowotka <mmm...@gmail.com> wrote:
> Yes, I mean even RDKit.
>
> No, the trouble maker has exactly the same system. The only difference is
> that in order to install my app on other machines I was using fabric and on
> the problematic machines I just rsynced directories from working machines.
>
> The only error in error_log is:
>
> ImportError: libRDGeneral.so.1: cannot open shared object file: No such file
> or directory
>
>
>
>
> On Tue, Sep 10, 2013 at 9:47 PM, Markus Sitzmann
> <sitzm...@helix.nih.gov>wrote:
>
>> **
>> So you mean, you have even RDKit running with this setup on other machines
>> or just the other libraries.
>>
>> If "other machines" vs the trouble maker machine includes a change from
>> RH5
>> to RH6 than indeed I would suspect SELinux as Igor suggested. Don't ask me
>> for a solution except for switching it off.
>>
>> Is there anything (else) in /var/log/httpd/error_log?
>>
>> Markus
>>
>> On Tue, 10 Sep 2013 15:36:27 -0400, Michał Nowotka <mmm...@gmail.com>
>> wrote:
>>
>> Yes, I can. What is more important I successfully managed to run other
>> libraries with extensions in C (indigo toolkit, cx_Oracle). What is even
>> more important the same configuration (at least it seems to be the same)
>> works on other machines. Unfortunately I don't know how to debug to find
>> source of my problems....
>>
>>
>> On Tue, Sep 10, 2013 at 9:32 PM, Markus Sitzmann
>> <sitzm...@helix.nih.gov>wrote:
>>
>>> How far is your setup working so far? Can you already run python scripts
>>> via mod_wsgi without importing rdkit?
>>>
>>>
>>>
>>>
>>> On Tue, 10 Sep 2013 15:29:07 -0400, Michał Nowotka <mmm...@gmail.com>
>>> wrote:
>>>
>>> Yes: python, mod_wsgi, vitualenv, RHEL
>>>
>>>
>>> On Tue, Sep 10, 2013 at 9:22 PM, Markus Sitzmann <sitzm...@helix.nih.gov
>>> > wrote:
>>>
>>>> Are you trying to use it with python/mod_wsgi? Your description so far
>>>> is a bit vague :-)
>>>>
>>>> Markus
>>>>
>>>> On Tue, 10 Sep 2013 15:00:55 -0400, Michał Nowotka <mmm...@gmail.com>
>>>> wrote:
>>>>
>>>> Thanks for advices. Unfortunately I can't do anything system-wide as I
>>>> don't have administrator privileges on the server. Than also means I can't
>>>> switch selinux.
>>>>
>>>>
>>>> On Tue, Sep 10, 2013 at 7:59 PM, Igor Filippov <
>>>> igor.v.filip...@gmail.com> wrote:
>>>>
>>>>> Some kind of an answer seems to be already given at Stackoverflow.
>>>>> I would add two comments:
>>>>> 1) Unless there are some specific problems with this you can add new
>>>>> library system-wide through ld.so.conf
>>>>> 2) You did not mention what your log files say but I would experiment
>>>>> with Selinux switched off.
>>>>>
>>>>>
>>>>>
>>>>> On Tue, Sep 10, 2013 at 1:51 PM, Michał Nowotka <mmm...@gmail.com>wrote:
>>>>>
>>>>>> I have some problems with configuring apache to use rdkit, this is
>>>>>> described in SO question:
>>>>>>
>>>>>>
>>>>>> http://stackoverflow.com/questions/2550504/setting-ld-library-path-in-apache-passenv-setenv-still-cant-find-library
>>>>>>
>>>>>> Any help would be appreciated!
>>>>>>
>>>>>> Regards,
>>>>>> Michał Nowotka
>>>>>>
>>>>>>
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>>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>>
>>>
>>
>>
>>
>>
>
>
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