What happens if you import RDKit into a regular python shell without mod_wsgi
on this computer? If this works than the mod_wsgi python maybe runs on another
python interpreter.
On Tue, 10 Sep 2013 16:08:24 -0400, Michał Nowotka <mmm...@gmail.com> wrote:
Believe me, I restarted it many times :)On Tue, Sep 10, 2013 at 10:06 PM, Igor Filippov <igor.v.filip...@gmail.com> wrote:
Maybe move the rdkit libs into some folder within apache DocumentRoot?Did you restart apache after syncing the libraries?On Tue, Sep 10, 2013 at 3:58 PM, Michał Nowotka <mmm...@gmail.com> wrote:
Yes, I mean even RDKit.No, the trouble maker has exactly the same system. The only difference is that in order to install my app on other machines I was using fabric and on the problematic machines I just rsynced directories from working machines.
The only error in error_log is:ImportError: libRDGeneral.so.1: cannot open shared object file: No such file or directoryOn Tue, Sep 10, 2013 at 9:47 PM, Markus Sitzmann <sitzm...@helix.nih.gov> wrote:
So you mean, you have even RDKit running with this setup on other machinesor just the other libraries.If "other machines" vs the trouble maker machine includes a change from RH5to RH6 than indeed I would suspect SELinux as Igor suggested. Don't ask mefor a solution except for switching it off.Is there anything (else) in /var/log/httpd/error_log?MarkusOn Tue, 10 Sep 2013 15:36:27 -0400, Michał Nowotka <mmm...@gmail.com> wrote:
Yes, I can. What is more important I successfully managed to run other libraries with extensions in C (indigo toolkit, cx_Oracle). What is even more important the same configuration (at least it seems to be the same) works on other machines. Unfortunately I don't know how to debug to find source of my problems....On Tue, Sep 10, 2013 at 9:32 PM, Markus Sitzmann <sitzm...@helix.nih.gov> wrote:
How far is your setup working so far? Can you already run python scriptsvia mod_wsgi without importing rdkit?On Tue, 10 Sep 2013 15:29:07 -0400, Michał Nowotka <mmm...@gmail.com> wrote:Yes: python, mod_wsgi, vitualenv, RHELOn Tue, Sep 10, 2013 at 9:22 PM, Markus Sitzmann <sitzm...@helix.nih.gov> wrote:
Are you trying to use it with python/mod_wsgi? Your description so far is a bit vague :-)MarkusOn Tue, 10 Sep 2013 15:00:55 -0400, Michał Nowotka <mmm...@gmail.com> wrote:Thanks for advices. Unfortunately I can't do anything system-wide as I don't have administrator privileges on the server. Than also means I can't switch selinux.On Tue, Sep 10, 2013 at 7:59 PM, Igor Filippov <igor.v.filip...@gmail.com> wrote:Some kind of an answer seems to be already given at Stackoverflow.I would add two comments:1) Unless there are some specific problems with this you can add new library system-wide through ld.so.conf2) You did not mention what your log files say but I would experiment with Selinux switched off.On Tue, Sep 10, 2013 at 1:51 PM, Michał Nowotka <mmm...@gmail.com> wrote:
------------------------------------------------------------------------------Michał NowotkaRegards,I have some problems with configuring apache to use rdkit, this is described in SO question:Any help would be appreciated!
http://stackoverflow.com/questions/2550504/setting-ld-library-path-in-apache-passenv-setenv-still-cant-find-library
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