I've made a Fink package for OS X, if that helps.  If you don't want to use 
fink, it might still be of use to look at it.

http://fink.cvs.sourceforge.net/viewvc/fink/dists/10.7/stable/main/finkinfo/sci/rdkit.info?view=markup

HTH,


William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
228 Sinsheimer Laboratories
University of California at Santa Cruz
Santa Cruz, California 95064
USA
 

On Oct 21, 2013, at 9:07 AM, Nathan Brown <nathan.br...@icr.ac.uk> wrote:

> Hi All,
> 
> I'm having some trouble installing RDKit using Eddie's brew on my new MacBook 
> Pro. I've attached the reported errors below.
> 
> Has anyone seen these before or have any idea how complete the installation?
> 
> Cheers, Nath
> 
> --------------------------------------------------------------------------------
> 
> 104876CTHLT:Library nbrown$ brew doctor
> Your system is ready to brew.
> 104876CTHLT:Library nbrown$ brew install --HEAD rdkit
> ==> Cloning https://github.com/rdkit/rdkit.git
> Updating /Library/Caches/Homebrew/rdkit--git
> ==> cmake -DCMAKE_INSTALL_PREFIX='/usr/local/Cellar/rdkit/HEAD' 
> -DCMAKE_BUILD_TYPE=None -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev 
> -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF 
> -DPYTHON_LIBRARY='/Syste
>    used as include directory in directory 
> /tmp/rdkit-oc3C/Code/ChemicalFeatures/Wrap
> 
> -- Configuring incomplete, errors occurred!
> See also "/tmp/rdkit-oc3C/CMakeFiles/CMakeOutput.log".
> See also "/tmp/rdkit-oc3C/CMakeFiles/CMakeError.log".
> 
> READ THIS: https://github.com/mxcl/homebrew/wiki/troubleshooting
> 
> --------------------------------------------------------------------------------
> 
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