Hi Eddie, Thanks for the instructions. I've attached the log files to this email.
Hope you can help! I'm starting to get some stick in the office... Cheers, Nath ________________________________________ From: Yiqun Cao [cao.yi...@gmail.com] Sent: 23 October 2013 05:32 To: Nathan Brown Cc: greg landrum; rdkit-discuss@lists.sourceforge.net Subject: Re: [Rdkit-discuss] Problems homebrewing RDKit Hi Nathan, The temporary folder got deleted when the brew command exited. You can brew in the debug mode instead: brew install -v --debug --HEAD rdkit When the error occurs, you will be left in a temporary shell. You can then harvest the log file. Once you exit the temporary shell, the folder will get deleted as usual. Regards, Eddie On Oct 22, 2013, at 3:44 AM, Nathan Brown <nathan.br...@icr.ac.uk<mailto:nathan.br...@icr.ac.uk>> wrote: Hi Greg, I would do, but the directory doesn't exist, strangelyŠ Cheers, Nath From: greg landrum <greg.land...@gmail.com<mailto:greg.land...@gmail.com>> Date: Monday, 21 October 2013 20:09 To: Nathan Brown <nathan.br...@icr.ac.uk<mailto:nathan.br...@icr.ac.uk>> Cc: "rdkit-discuss@lists.sourceforge.net<mailto:rdkit-discuss@lists.sourceforge. net>" <rdkit-discuss@lists.sourceforge.net<mailto:rdkit-discuss@lists.sourceforge. net>> Subject: Re: [Rdkit-discuss] Problems homebrewing RDKit Nath, Can you please send a copy of the output and error logs that are mentioned below? -greg On 21 Oct 2013, at 18:07, Nathan Brown <nathan.br...@icr.ac.uk<mailto:nathan.br...@icr.ac.uk>> wrote: Hi All, I'm having some trouble installing RDKit using Eddie's brew on my new MacBook Pro. I've attached the reported errors below. Has anyone seen these before or have any idea how complete the installation? Cheers, Nath ---------------------------------------------------------------------- ---------- 104876CTHLT:Library nbrown$ brew doctor Your system is ready to brew. 104876CTHLT:Library nbrown$ brew install --HEAD rdkit ==> Cloning https://github.com/rdkit/rdkit.git Updating /Library/Caches/Homebrew/rdkit--git ==> cmake -DCMAKE_INSTALL_PREFIX='/usr/local/Cellar/rdkit/HEAD' -DCMAKE_BUILD_TYPE=None -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF -DPYTHON_LIBRARY='/Syste used as include directory in directory /tmp/rdkit-oc3C/Code/ChemicalFeatures/Wrap -- Configuring incomplete, errors occurred! See also "/tmp/rdkit-oc3C/CMakeFiles/CMakeOutput.log". See also "/tmp/rdkit-oc3C/CMakeFiles/CMakeError.log". READ THIS: https://github.com/mxcl/homebrew/wiki/troubleshooting --------------------- ----------------------------------------------------------- The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail message is confidential and for use by the addressee only. If the message is received by anyone other than the addressee, please return the message to the sender by replying to it and then delete the message from your computer and network. ------------------------------------------------------------------- ----------- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register > http://pubads.g.doubleclick.net/gampad/clk?id=60135031&iu=/4140/ostg.clktr k _______________________________________________ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net<mailto:Rdkit-discuss@lists.sourcefo rge.net> https://lists.sourceforge.net/lists/listinfo/rdkit-discuss The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail message is confidential and for use by the addressee only. If the message is received by anyone other than the addressee, please return the message to the sender by replying to it and then delete the message from your computer and network. ------------------------------------------------------------------- ----------- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register > http://pubads.g.doubleclick.net/gampad/clk?id=60135991&iu=/4140/ostg.clktr k_______________________________________________ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists /listinfo/rdkit-discuss The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail message is confidential and for use by the addressee only. If the message is received by anyone other than the addressee, please return the message to the sender by replying to it and then delete the message from your computer and network.
CMakeError.log
Description: CMakeError.log
CMakeOutput.log
Description: CMakeOutput.log
------------------------------------------------------------------------------ October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register > http://pubads.g.doubleclick.net/gampad/clk?id=60135991&iu=/4140/ostg.clktrk
_______________________________________________ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
