And that I should either remove that setup.py file or figure out how to
make it work. Grrrr.
-greg
On Monday, December 16, 2013, David Hall wrote:
> The quick answer is that you should use cmake to build rdkit.
> http://rdkit.org/docs/Install.html#building-the-rdkit
>
> -David
>
> On Monday, December 16, 2013 at 9:11 AM, Sören Wacker wrote:
>
> Hi,
>
> I would like to install rdkit. However, I ran into a problem that I
> could not find in the mailing list to be discussed.
>
> I downloaded the repository by
>
> >git clone https://github.com/rdkit/rdkit
> >cd rdkit
> >chmod 700 setup.py
> >./setup.py build
> running build
> running build_py
>
> >su
> >./setup.py install #Full output see below.
> ...
> error: can't copy 'rdkit/rdBase.so': doesn't exist or not a regular file
>
> So, this file seems to be missing in the repository. Why is that so? How
> can I repair that?
> Is there an easy way to remove the failed installation?
> I tried "./setup.py remove" but that's not known.
>
>
> Hope you can help me.
> Best regards
> Sören
>
>
>
>
> full output of "./setup.py install"
> running install
> running build
> running build_py
> running install_lib
> creating /usr/lib/python2.7/site-packages/rdkit
> copying build/lib/rdkit/TestRunner.py ->
> /usr/lib/python2.7/site-packages/rdkit
> creating /usr/lib/python2.7/site-packages/rdkit/ML
> copying build/lib/rdkit/ML/BuildComposite.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML
> copying build/lib/rdkit/ML/EnrichPlot.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML
> creating /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/UnitTestPrune.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/randomtest.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/__init__.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/TreeUtils.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/PruneTree.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/Forest.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/BuildSigTree.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/UnitTestID3.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/UnitTestSigTree.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/UnitTestQuantTree.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/UnitTestTree.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/test_list.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/TreeVis.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/UnitTestXVal.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/DecTree.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/CrossValidate.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/Tree.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/SigTree.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/ID3.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/QuantTree.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/DecTree/BuildQuantTree.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
> copying build/lib/rdkit/ML/AnalyzeComposite.py ->
> /usr/lib/python2.7/site-packages/rdkit/ML
> creating /usr/lib/python2.7/site-packages/rdkit/ML/Descriptors
> copying build/l
>
>
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