On Monday, December 16, 2013, Igor Filippov wrote:
> >chmod 700 setup.py
> >./setup.py build
>
> How was it ever going to work? I don't think it's in any of the build
> instructions.
> And the build instructions aren't exactly hard to find these days - unlike
> the old procedure with bjam, etc.
> RTFM seems like an appropriate response here.
>
I think it's fair to expect a setup.py file to actually work. The rdkit one
does not.
The reason it's there was to try and provide a simpler "make install"
replacement for the python stuff (once a build has been done). Given that
it doesn't work (and is unlikely to). I will get rid of the file.
>
> On Mon, Dec 16, 2013 at 12:58 PM, Greg Landrum
> <[email protected]<javascript:_e({}, 'cvml', '[email protected]');>
> > wrote:
>
>> And that I should either remove that setup.py file or figure out how to
>> make it work. Grrrr.
>>
>> -greg
>>
>> On Monday, December 16, 2013, David Hall wrote:
>>
>> The quick answer is that you should use cmake to build rdkit.
>> http://rdkit.org/docs/Install.html#building-the-rdkit
>>
>> -David
>>
>> On Monday, December 16, 2013 at 9:11 AM, Sören Wacker wrote:
>>
>> Hi,
>>
>> I would like to install rdkit. However, I ran into a problem that I
>> could not find in the mailing list to be discussed.
>>
>> I downloaded the repository by
>>
>> >git clone https://github.com/rdkit/rdkit
>> >cd rdkit
>> >chmod 700 setup.py
>> >./setup.py build
>> running build
>> running build_py
>>
>> >su
>> >./setup.py install #Full output see below.
>> ...
>> error: can't copy 'rdkit/rdBase.so': doesn't exist or not a regular file
>>
>> So, this file seems to be missing in the repository. Why is that so? How
>> can I repair that?
>> Is there an easy way to remove the failed installation?
>> I tried "./setup.py remove" but that's not known.
>>
>>
>> Hope you can help me.
>> Best regards
>> Sören
>>
>>
>>
>>
>> full output of "./setup.py install"
>> running install
>> running build
>> running build_py
>> running install_lib
>> creating /usr/lib/python2.7/site-packages/rdkit
>> copying build/lib/rdkit/TestRunner.py ->
>> /usr/lib/python2.7/site-packages/rdkit
>> creating /usr/lib/python2.7/site-packages/rdkit/ML
>> copying build/lib/rdkit/ML/BuildComposite.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML
>> copying build/lib/rdkit/ML/EnrichPlot.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML
>> creating /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
>> copying build/lib/rdkit/ML/DecTree/UnitTestPrune.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
>> copying build/lib/rdkit/ML/DecTree/randomtest.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
>> copying build/lib/rdkit/ML/DecTree/__init__.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
>> copying build/lib/rdkit/ML/DecTree/TreeUtils.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
>> copying build/lib/rdkit/ML/DecTree/PruneTree.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
>> copying build/lib/rdkit/ML/DecTree/Forest.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
>> copying build/lib/rdkit/ML/DecTree/BuildSigTree.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
>> copying build/lib/rdkit/ML/DecTree/UnitTestID3.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
>> copying build/lib/rdkit/ML/DecTree/UnitTestSigTree.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
>> copying build/lib/rdkit/ML/DecTree/UnitTestQuantTree.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
>> copying build/lib/rdkit/ML/DecTree/UnitTestTree.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
>> copying build/lib/rdkit/ML/DecTree/test_list.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
>> copying build/lib/rdkit/ML/DecTree/TreeVis.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
>> copying build/lib/rdkit/ML/DecTree/UnitTestXVal.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
>> copying build/lib/rdkit/ML/DecTree/DecTree.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
>> copying build/lib/rdkit/ML/DecTree/CrossValidate.py ->
>> /usr/lib/python2.7/site-packages/rdkit/ML/DecTree
>> copying build/lib/rdkit/ML/DecTree/Tree.py ->
>> /usr/lib/python2.7/site-packages
>>
>>
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