Dear Greg,
Thanks a lot, molSize worked for me (but still not perfect - images in rdkit
tutorials are much smoother). Im using mac os. I tried to install aggdraw but
the error occurred. So I installed pycario. How can I make it work?
cheers,
Alexey
On Dec 18, 2013, at 16:57 , Greg Landrum <[email protected]> wrote:
> Hi Alexey,
>
> Are you looking to increase the size of the figures in the notebook?
> This isn't particularly user friendly (I'm happy to hear about standard
> solutions to this), but you can do it by setting:
> IPythonConsole.molSize
> The default is (450,150). Increasing it:
> IPythonConsole.molSize=(600,200)
> will increase the size of the figures.
>
> If the problem is that the lines in your drawing are "jaggy" instead of
> smooth, the solution is to install either aggdraw or pycairo. Which operating
> system are you using?
>
> -greg
>
>
>
>
> On Wed, Dec 18, 2013 at 4:17 PM, Alexey Chernobrovkin
> <[email protected]> wrote:
> Dear all,
>
> Im using rdkit in my ipython notebook session. However the resolution of
> inline figures (2D structures) is so pure. General inline graphics controls
> does not help (like %config InlineBackend.figure_format, %config
> InlineBackend.rc etc.). Could anyone suggest me how to improve inline
> graphics resolution/quality?
>
>
> Best wishes,
> Alexey Chernobrovkin, PhD
>
> Department of Medical Biochemistry & Biophysics | Karolinska Institutet
> 17177 Stockholm | Scheelesväg 2
> +46 8 524 878 69
> [email protected] | ki.se
> ______________________________________
> Karolinska Institutet – a medical university
>
>
>
>
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