Dimitri, Hs are removed. Their is a removeHs argument in MolFromMolBlock (python) that defaults to true.
There is a corollary in SDMolSupplier if you are using that. supplier = SDMolSupplier(filename, removeHs=false) if this helps. On Thu, Sep 8, 2016 at 2:46 PM, Dimitri Maziuk <dmaz...@bmrb.wisc.edu> wrote: > On 09/08/2016 10:25 AM, Greg Landrum wrote: > ... > > Why do you want 2D drawings that include H atoms? > > On the subject of H atoms: when I read in the MOL file that has them, I > need to explicitly call AddHs() in order to have them drawn. > > Question: do they actually get stripped off by the reader and re-added > by AddHs()? Or are they there "hidden" somehow and AddHs() just > "unhides" them? > > TIA > -- > Dimitri Maziuk > Programmer/sysadmin > BioMagResBank, UW-Madison -- http://www.bmrb.wisc.edu > > > ------------------------------------------------------------ > ------------------ > > _______________________________________________ > Rdkit-discuss mailing list > Rdkit-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss > >
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