This may have already been addressed in the next release, but I wanted to
be sure. It appears that Pandas was refactored in the 0.20.1 release in a
way that breaks PandasTools:
Python 3.6.1 |Continuum Analytics, Inc.| (default, May 11 2017, 13:25:24)
[MSC v.1900 64 bit (AMD64)] on win32
Type "help", "copyright", "credits" or "license" for more information.
>>> import pandas as pd
>>> print('pandas version: ' + pd.__version__)
pandas version: 0.20.1
>>> from rdkit.Chem import PandasTools
Traceback (most recent call last):
File
"C:\miniconda3\envs\rdkit-2017_03_1\lib\site-packages\rdkit\Chem\PandasTools.py",
line 152, in <module>
from pandas.formats import format as fmt
ImportError: cannot import name 'format'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File
"C:\miniconda3\envs\rdkit-2017_03_1\lib\site-packages\rdkit\Chem\PandasTools.py",
line 154, in <module>
from pandas.core import format as fmt # older versions
ImportError: cannot import name 'format'
In particular, format.py was moved from pandas/formats to
pandas/io/formats. An immediate quick fix is to copy
pandas/io/formats/format.py to pandas/formats.
Cheers,
Steve
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