On Tue, Dec 12, 2017 at 7:28 PM, Andrey <pti...@ua.fm> wrote:

> Does this depend on removeHs() function? I mean, to make MergeQueryHs()
> work, should I do removeHs=False first for all compounds in my database, to
> preserve implicit\explicit hydrogens in their structure?

The MergeQueryHs() functionality is primarily intended to be used for
molecules where the Hs have been removed.

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