URL:
<http://gna.org/task/?func=detailitem&item_id=2615>
Summary: Submission of CalcOligo
Project: Gna! Administration
Submitted by: danyi_k
Submitted on: Fri 11/18/05 at 02:04
Status: None
Approval Status: None
Should Start On: Fri 11/18/05 at 00:00
Should be Finished on: Mon 11/28/05 at 00:00
Category: Project Approval
Priority: 5 - Normal
Privacy: Public
Assigned to: None
Open/Closed: Open
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Details:
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######### REGISTRATION DETAILS #########
Full Name:
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CalcOligo
System Group Name:
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calcoligo
Type:
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Programs
License:
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GNU General Public License V2 or later
Description:
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CalcOligo helps to predict the hybridization process on the DNA-chip
surface. Using a novel mathematical model and real datasets, it optimizes the
parameters for estimation of hibridizing. With the help of this new method,
the in silico optimization process takes place in situ the DNA-chip
laboratory, then using the established parameters one can model the
hybridization, which is the cornerstone of DNA-chip design.
For the implementation so far Simulated Anneling was used, and other
optimization methods are in progress as well as other features (TIFF file
processing). As input data now ARB files (http://www.arb-home.de/) and GPR
files (www.research.dfci.harvard.edu/~belfer/pdf/datadefinition.pdf) are
used.
Source code URL:
http://www.stud.u-szeged.hu/Danyi.Kornelia/CalcOligo.zip
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