Author: bugman
Date: Wed Jan 21 16:01:27 2015
New Revision: 27262
URL: http://svn.gna.org/viewcvs/relax?rev=27262&view=rev
Log:
The lib.sequence_alignment.align_protein.align_pairwise() function now returns
data.
This includes both alignment strings as well as the gap matrix.
Modified:
trunk/lib/sequence_alignment/align_protein.py
Modified: trunk/lib/sequence_alignment/align_protein.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/lib/sequence_alignment/align_protein.py?rev=27262&r1=27261&r2=27262&view=diff
==============================================================================
--- trunk/lib/sequence_alignment/align_protein.py (original)
+++ trunk/lib/sequence_alignment/align_protein.py Wed Jan 21 16:01:27 2015
@@ -49,6 +49,8 @@
@type gap_penalty: float
@keyword extend_penalty: The penalty for extending a gap, as a positive
number.
@type extend_penalty: float
+ @return: The two alignment strings and the gap matrix.
+ @rtype: str, str, numpy rank-2 int array
"""
# Checks.
@@ -96,3 +98,6 @@
sys.stdout.write(" ")
sys.stdout.write("\n\n")
+ # Return the results.
+ return align1, align2, gaps
+
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