Hi, If you perform an svnmerge now, you should have most of the test suite working. There is one failure in the system tests at the moment and that is in the Mf.test_dauvergne_protocol test. The problem is that I have added calls to pymol.write() to create PyMOL macros, but this code does not exist yet. Michael Bieri coded the PyMOL macros directly into the GUI code, but I am in the process of shifting it into the relax back end as a user function. The GUI tests are also failing for some unknown reason related to the multi-processor IO redirection which I am still hunting down.
Regards, Edward On 25 August 2011 12:42, Sébastien Morin <[email protected]> wrote: > Hi Ed, > > Yeah, I had the impression it was your fault..! :p > > Anyway, I am fixing other things at the moment. > Please let me know when this is fixed. > > Cheers, > > > Séb :) > > > On 11-08-25 12:40 PM, Edward d'Auvergne wrote: >> >> Hi, >> >> I'm working on this at the moment. Unfortunately the main 1.3 line is >> severely broken at the moment! The new multi-processor package is >> clashing with and causing relax to die hard on the test-suite and the >> GUI. The main cause is IO redirection of sys.stdout and sys.stderr. >> The multi-processor code (even in uni-processor mode) is hijacking the >> streams and the test suite and GUI do not know what to do anymore. >> Once I eliminate all the IO redirection of the multi package, apart >> from the IO capture on the slave processes which is non-functional >> anyway, then the test-suite should be back in order. I noticed you >> performed an svnmerge, and this is likely causing the breakages in >> your branch. >> >> Regards, >> >> Edward >> >> >> On 25 August 2011 12:23, Sébastien Morin<[email protected]> >> wrote: >>> >>> Hi Ed, >>> >>> While working on "inversion-recovery" branch, I realized that the system >>> tests "Relax_fit.check_curve_fitting__exp_2param_neg" and >>> "Relax_fit.check_curve_fitting__exp_3param_inv_neg" were failing. In >>> order >>> to pin point the problem, I checked on the main 1.3 branch (514439) and >>> system test "Relax_fit.check_curve_fitting" also failed, with the same >>> error: >>> >>> ========== >>> ====================================================================== >>> ERROR: check_curve_fitting (test_suite.system_tests.relax_fit.Relax_fit) >>> Check the results of the curve-fitting. >>> ---------------------------------------------------------------------- >>> >>> relax> pipe.create(pipe_name='mf', pipe_type='mf') >>> Traceback (most recent call last): >>> File >>> >>> "/Users/semor/Documents/pse-4/collaborations/relax/relax-1.3/test_suite/system_tests/relax_fit.py", >>> line 60, in check_curve_fitting >>> self.assertEqual(cdp.curve_type, 'exp') >>> AttributeError: 'PipeContainer' object has no attribute 'curve_type' >>> >>> ---------------------------------------------------------------------- >>> Ran 1 test in 0.001s >>> >>> FAILED (errors=1) >>> ========== >>> >>> I tried changing the pipe type from "mf" to "relax_fit" (as it should >>> be). >>> This did not solve the issue... >>> >>> Any idea ? >>> Thanks ! >>> >>> >>> Séb :) >>> >>> -- >>> Sébastien Morin, Ph.D. >>> Postdoctoral Fellow, S. Grzesiek NMR Laboratory >>> Department of Structural Biology >>> Biozentrum, Universität Basel >>> Klingelbergstrasse 70 >>> 4056 Basel >>> Switzerland >>> >>> >>> _______________________________________________ >>> relax (http://nmr-relax.com) >>> >>> This is the relax-devel mailing list >>> [email protected] >>> >>> To unsubscribe from this list, get a password >>> reminder, or change your subscription options, >>> visit the list information page at >>> https://mail.gna.org/listinfo/relax-devel >>> > > -- > Sébastien Morin, Ph.D. > Postdoctoral Fellow, S. Grzesiek NMR Laboratory > Department of Structural Biology > Biozentrum, Universität Basel > Klingelbergstrasse 70 > 4056 Basel > Switzerland > > _______________________________________________ relax (http://nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
