Hi, Ah, now I've worked out what is going on. The check_curve_fitting() method is an auxiliary method for checking the results from the Relax_fit.test_curve_fitting_height and Relax_fit.test_curve_fitting_volume. It is not actually a system test, only methods starting with test_*() are actually real tests. Therefore you shouldn't run "./relax -s Relax_fit.check_curve_fitting". I'm not sure why relax is letting you do that.
Regards, Edward On 25 August 2011 16:59, Sébastien Morin <[email protected]> wrote: > Hi again, > > Quite funny. If the test is ran as part of "relax -s", then it does not > fail... > > However, if running "./relax -s Relax_fit.check_curve_fitting", then a > failure arises... > > Are we supposed to be able to run each test individually ? > > > Séb :) > > > On 11-08-25 4:45 PM, Sébastien Morin wrote: >> >> Hi, >> >> The problem I mentioned with the system test using >> "Relax_fit.check_curve_fitting" is still present... >> >> I will wait..! >> >> >> Séb :) >> >> >> >> On 11-08-25 1:03 PM, Edward d'Auvergne wrote: >>> >>> Hi, >>> >>> If you perform an svnmerge now, you should have most of the test suite >>> working. There is one failure in the system tests at the moment and >>> that is in the Mf.test_dauvergne_protocol test. The problem is that I >>> have added calls to pymol.write() to create PyMOL macros, but this >>> code does not exist yet. Michael Bieri coded the PyMOL macros >>> directly into the GUI code, but I am in the process of shifting it >>> into the relax back end as a user function. The GUI tests are also >>> failing for some unknown reason related to the multi-processor IO >>> redirection which I am still hunting down. >>> >>> Regards, >>> >>> Edward >>> >>> >>> >>> On 25 August 2011 12:42, Sébastien Morin<[email protected]> >>> wrote: >>>> >>>> Hi Ed, >>>> >>>> Yeah, I had the impression it was your fault..! :p >>>> >>>> Anyway, I am fixing other things at the moment. >>>> Please let me know when this is fixed. >>>> >>>> Cheers, >>>> >>>> >>>> Séb :) >>>> >>>> >>>> On 11-08-25 12:40 PM, Edward d'Auvergne wrote: >>>>> >>>>> Hi, >>>>> >>>>> I'm working on this at the moment. Unfortunately the main 1.3 line is >>>>> severely broken at the moment! The new multi-processor package is >>>>> clashing with and causing relax to die hard on the test-suite and the >>>>> GUI. The main cause is IO redirection of sys.stdout and sys.stderr. >>>>> The multi-processor code (even in uni-processor mode) is hijacking the >>>>> streams and the test suite and GUI do not know what to do anymore. >>>>> Once I eliminate all the IO redirection of the multi package, apart >>>>> from the IO capture on the slave processes which is non-functional >>>>> anyway, then the test-suite should be back in order. I noticed you >>>>> performed an svnmerge, and this is likely causing the breakages in >>>>> your branch. >>>>> >>>>> Regards, >>>>> >>>>> Edward >>>>> >>>>> >>>>> On 25 August 2011 12:23, Sébastien Morin<[email protected]> >>>>> wrote: >>>>>> >>>>>> Hi Ed, >>>>>> >>>>>> While working on "inversion-recovery" branch, I realized that the >>>>>> system >>>>>> tests "Relax_fit.check_curve_fitting__exp_2param_neg" and >>>>>> "Relax_fit.check_curve_fitting__exp_3param_inv_neg" were failing. In >>>>>> order >>>>>> to pin point the problem, I checked on the main 1.3 branch (514439) >>>>>> and >>>>>> system test "Relax_fit.check_curve_fitting" also failed, with the same >>>>>> error: >>>>>> >>>>>> ========== >>>>>> ====================================================================== >>>>>> ERROR: check_curve_fitting >>>>>> (test_suite.system_tests.relax_fit.Relax_fit) >>>>>> Check the results of the curve-fitting. >>>>>> ---------------------------------------------------------------------- >>>>>> >>>>>> relax> pipe.create(pipe_name='mf', pipe_type='mf') >>>>>> Traceback (most recent call last): >>>>>> File >>>>>> >>>>>> >>>>>> "/Users/semor/Documents/pse-4/collaborations/relax/relax-1.3/test_suite/system_tests/relax_fit.py", >>>>>> line 60, in check_curve_fitting >>>>>> self.assertEqual(cdp.curve_type, 'exp') >>>>>> AttributeError: 'PipeContainer' object has no attribute 'curve_type' >>>>>> >>>>>> ---------------------------------------------------------------------- >>>>>> Ran 1 test in 0.001s >>>>>> >>>>>> FAILED (errors=1) >>>>>> ========== >>>>>> >>>>>> I tried changing the pipe type from "mf" to "relax_fit" (as it should >>>>>> be). >>>>>> This did not solve the issue... >>>>>> >>>>>> Any idea ? >>>>>> Thanks ! >>>>>> >>>>>> >>>>>> Séb :) >>>>>> >>>>>> -- >>>>>> Sébastien Morin, Ph.D. >>>>>> Postdoctoral Fellow, S. Grzesiek NMR Laboratory >>>>>> Department of Structural Biology >>>>>> Biozentrum, Universität Basel >>>>>> Klingelbergstrasse 70 >>>>>> 4056 Basel >>>>>> Switzerland >>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> relax (http://nmr-relax.com) >>>>>> >>>>>> This is the relax-devel mailing list >>>>>> [email protected] >>>>>> >>>>>> To unsubscribe from this list, get a password >>>>>> reminder, or change your subscription options, >>>>>> visit the list information page at >>>>>> https://mail.gna.org/listinfo/relax-devel >>>>>> >>>> -- >>>> Sébastien Morin, Ph.D. >>>> Postdoctoral Fellow, S. Grzesiek NMR Laboratory >>>> Department of Structural Biology >>>> Biozentrum, Universität Basel >>>> Klingelbergstrasse 70 >>>> 4056 Basel >>>> Switzerland >>>> >>>> > > -- > Sébastien Morin, Ph.D. > Postdoctoral Fellow, S. Grzesiek NMR Laboratory > Department of Structural Biology > Biozentrum, Universität Basel > Klingelbergstrasse 70 > 4056 Basel > Switzerland > > > _______________________________________________ > relax (http://nmr-relax.com) > > This is the relax-devel mailing list > [email protected] > > To unsubscribe from this list, get a password > reminder, or change your subscription options, > visit the list information page at > https://mail.gna.org/listinfo/relax-devel > _______________________________________________ relax (http://nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
