They dont fail in trunk?
2014-06-17 17:34 GMT+02:00 Troels Emtekær Linnet <[email protected]>: > Hi Ed. > > In the branch, these now fails: > F 7.58 s for Relax_disp.test_hansen_cpmg_data_missing_auto_analysis > F 1.52 s for Relax_disp.test_hansen_cpmg_data_to_lm63 > > test_hansen_cpmg_data_missing_auto_analysis > Parameter Value (:4) Value (:70) Value (:71) > > R2 (500 MHz) 1.60452966296907 6.97268077496405 > 4.98123328466942 > R2 (800 MHz) 1.63223230080618 9.41028133407727 > 7.64929786833292e-05 > pA 0.720760281714722 0.989856641885939 > 0.996607425484157 > dw 1.129978566257e-13 5.60889911049405 > 4.34346257383825 > kex 6.53499879470298e-17 1752.62025618632 > 1936.73197158804 > chi2 26.735669607943 53.838219696406 > 5.51703791653498 > > Traceback (most recent call last): > File > "/Users/tlinnet/software/disp_spin_speed/test_suite/system_tests/relax_disp.py", > line 2237, in test_hansen_cpmg_data_missing_auto_analysis > self.assertAlmostEqual(spin4.pA, 0.818979078699935, 3) > AssertionError: 0.72076028171472162 != 0.818979078699935 within 3 places > > > test_hansen_cpmg_data_to_lm63 > Parameter Value (:70) Value (:71) > R2 (500 MHz) 6.74362296312195 5.00776658003049 > R2 (800 MHz) 6.57406796119727 6.83345258631709 > phi_ex 0.31273301474402 0.0553787826054241 > kex 4723.09898929193 2781.72292639007 > chi2 363.534044873483 17.0776399916288 > > Traceback (most recent call last): > File > "/Users/tlinnet/software/disp_spin_speed/test_suite/system_tests/relax_disp.py", > line 2485, in test_hansen_cpmg_data_to_lm63 > self.assertAlmostEqual(spin70.r2[r20_key2], 6.57406788826655) > AssertionError: 6.5740679611972741 != 6.57406788826655 within 7 places > > > relax repository checkout r24044 > svn+ssh:// > svn.gna.org/svn/relax/branches/disp_spin_speed > > Molecular dynamics by NMR data analysis > > Copyright (C) 2001-2006 Edward d'Auvergne > Copyright (C) 2006-2014 the relax development team > > This is free software which you are welcome to modify and redistribute > under the conditions of the > GNU General Public License (GPL). This program, including all modules, is > licensed under the GPL > and comes with absolutely no warranty. For details type 'GPL' within the > relax prompt. > > Assistance in using the relax prompt and scripting interface can be > accessed by typing 'help' within > the prompt. > > Processor fabric: Uni-processor. > > > Hardware information: > Machine: x86_64 > Processor: i386 > Processor name: Intel(R) Core(TM) i5-2435M CPU @ 2.40GHz > Endianness: little > Total RAM size: 2048.0 Mb > Total swap size: 6144.0 Mb > > Operating system information: > System: Darwin > Release: 13.2.0 > Version: Darwin Kernel Version 13.2.0: Thu Apr 17 > 23:03:13 PDT 2014; root:xnu-2422.100.13~1/RELEASE_X86_64 > Mac version: 10.9.3 (, , ) x86_64 > Distribution: > Full platform string: Darwin-13.2.0-x86_64-i386-64bit > > Python information: > Architecture: 64bit > Python version: 2.7.6 > Python branch: > Python build: default, Apr 11 2014 11:55:30 > Python compiler: GCC 4.2.1 (Apple Inc. build 5666) (dot 3) > Libc version: > Python implementation: CPython > Python revision: > Python executable: > /Users/tlinnet/Library/Enthought/Canopy_64bit/User/bin/pythonw > Python flags: sys.flags(debug=0, py3k_warning=0, > division_warning=0, division_new=0, inspect=0, interactive=0, optimize=0, > dont_write_bytecode=0, no_user_site=0, no_site=0, ignore_environment=0, > tabcheck=0, verbose=0, unicode=0, bytes_warning=0, hash_randomization=0) > Python float info: sys.float_info(max=1.7976931348623157e+308, > max_exp=1024, max_10_exp=308, min=2.2250738585072014e-308, min_exp=-1021, > min_10_exp=-307, dig=15, mant_dig=53, epsilon=2.220446049250313e-16, > radix=2, rounds=1) > Python module path: ['/Users/tlinnet/software/disp_spin_speed', > '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python27.zip', > '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7', > '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/plat-darwin', > '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/plat-mac', > '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/plat-mac/lib-scriptpackages', > '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/lib-tk', > '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/lib-old', > '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/lib-dynload', > '/Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages', > '/Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/PIL', > '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/site-packages'] > > Python packages and modules (most are optional): > > Name Installed Version Path > > > minfx True 1.0.7 > > /Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/minfx > > bmrblib True 1.0.3 > > /Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/bmrblib > > numpy True 1.8.0 > > /Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/numpy > > scipy True 0.13.3 > /Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/scipy > > wxPython True 2.9.2.4 osx-cocoa (classic) > > /Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/wx > > matplotlib True 1.3.1 > > /Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/matplotlib > > mpi4py False > > > epydoc True 3.0.1 > > /Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/epydoc > > optparse True 1.5.3 > > /Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/optparse.pyc > > readline True > > /Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/readline.so > > profile True > > /Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/profile.pyc > > bz2 True > > /Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/lib-dynload/bz2.so > > gzip True > > /Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/gzip.pyc > > io True > > /Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/io.pyc > > xml True 0.8.4 (internal) > /Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/xml/__init__.pyc > > xml.dom.minidom True > > /Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/xml/dom/minidom.pyc > > > relax information: > Version: repository checkout r24044 svn+ssh:// > svn.gna.org/svn/relax/branches/disp_spin_speed > Processor fabric: Uni-processor. > > relax C modules: > > Module Compiled File type > Path > > target_functions.relax_fit True 2-way ['Mach-O 64-bit bundle > x86_64', 'Mach-O bundle i386'] > /Users/tlinnet/software/disp_spin_speed/target_functions/relax_fit.so > > > > 2014-06-17 17:14 GMT+02:00 Edward d'Auvergne <[email protected]>: > > Sorry, I meant the Relax_disp.test_hansen_cpmg_data_to_lm63_3site >> system test that was deleted in r24024 in trunk. >> >> Cheers, >> >> Edward >> >> >> On 17 June 2014 17:13, Edward d'Auvergne <[email protected]> wrote: >> > Hi Troels, >> > >> > Note that after this commit, you must absolutely use the new minfx >> > 1.0.7 that I just released >> > (https://gna.org/forum/forum.php?forum_id=2466). All relaxation >> > dispersion system tests now pass in trunk, including the new >> > Relax_disp.test_lm63_3site_synthetic test. You should restore the >> > Relax_disp.test_lm63_3site_synthetic system test you deleted and >> > adjust the values so that we have better test coverage of the 'LM63 >> > 3-site' model (http://wiki.nmr-relax.com/LM63_3-site) as mentioned in >> > http://thread.gmane.org/gmane.science.nmr.relax.scm/21774/focus=6300. >> > >> > Regards, >> > >> > Edward >> > >> > >> > On 17 June 2014 17:06, <[email protected]> wrote: >> >> Author: tlinnet >> >> Date: Tue Jun 17 17:06:56 2014 >> >> New Revision: 24044 >> >> >> >> URL: http://svn.gna.org/viewcvs/relax?rev=24044&view=rev >> >> Log: >> >> Merged revisions 24040,24043 via svnmerge from >> >> svn+ssh://[email protected]/svn/relax/trunk >> >> >> >> ........ >> >> r24040 | bugman | 2014-06-17 15:56:47 +0200 (Tue, 17 Jun 2014) | 9 >> lines >> >> >> >> Fixes for all of the relaxation dispersion system tests which were >> failing with the new minfx code. >> >> >> >> Due to the tuning of the log barrier constraint algorithm in minfx >> in the commit at >> >> http://article.gmane.org/gmane.science.mathematics.minfx.scm/25, >> many system tests needed to be >> >> slightly adjusted. Two of the Relax_disp.test_tp02_data_to_* system >> tests were also failing as the >> >> optimisation can no longer move out of the minimum at pA = 0.5 for >> one spin (due to the low quality >> >> grid search in the auto-analysis). >> >> ........ >> >> r24043 | bugman | 2014-06-17 17:02:17 +0200 (Tue, 17 Jun 2014) | 3 >> lines >> >> >> >> Updated the release checklist document for the new 1.0.7 release of >> minfx. >> >> ........ >> >> >> >> Modified: >> >> branches/disp_spin_speed/ (props changed) >> >> branches/disp_spin_speed/docs/Release_Checklist >> >> branches/disp_spin_speed/test_suite/system_tests/relax_disp.py >> >> >> >> [This mail would be too long, it was shortened to contain the URLs >> only.] >> >> >> >> Modified: branches/disp_spin_speed/docs/Release_Checklist >> >> URL: >> http://svn.gna.org/viewcvs/relax/branches/disp_spin_speed/docs/Release_Checklist?rev=24044&r1=24043&r2=24044&view=diff >> >> >> >> Modified: >> branches/disp_spin_speed/test_suite/system_tests/relax_disp.py >> >> URL: >> http://svn.gna.org/viewcvs/relax/branches/disp_spin_speed/test_suite/system_tests/relax_disp.py?rev=24044&r1=24043&r2=24044&view=diff >> >> >> >> >> >> _______________________________________________ >> >> relax (http://www.nmr-relax.com) >> >> >> >> This is the relax-commits mailing list >> >> [email protected] >> >> >> >> To unsubscribe from this list, get a password >> >> reminder, or change your subscription options, >> >> visit the list information page at >> >> https://mail.gna.org/listinfo/relax-commits >> >> _______________________________________________ >> relax (http://www.nmr-relax.com) >> >> This is the relax-devel mailing list >> [email protected] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-devel >> > > _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
