You beat me too it :) I'm looking at the test suite in different VMs and test machines right now to make sure the tests pass on all systems. I can see these exact two tests failing now on my 32-bit Linux (Mageia 4) VM.
Regards, Edward On 17 June 2014 17:35, Troels Emtekær Linnet <[email protected]> wrote: > They dont fail in trunk? > > > 2014-06-17 17:34 GMT+02:00 Troels Emtekær Linnet <[email protected]>: > >> Hi Ed. >> >> In the branch, these now fails: >> F 7.58 s for Relax_disp.test_hansen_cpmg_data_missing_auto_analysis >> F 1.52 s for Relax_disp.test_hansen_cpmg_data_to_lm63 >> >> test_hansen_cpmg_data_missing_auto_analysis >> Parameter Value (:4) Value (:70) Value (:71) >> R2 (500 MHz) 1.60452966296907 6.97268077496405 >> 4.98123328466942 >> R2 (800 MHz) 1.63223230080618 9.41028133407727 >> 7.64929786833292e-05 >> pA 0.720760281714722 0.989856641885939 >> 0.996607425484157 >> dw 1.129978566257e-13 5.60889911049405 >> 4.34346257383825 >> kex 6.53499879470298e-17 1752.62025618632 >> 1936.73197158804 >> chi2 26.735669607943 53.838219696406 >> 5.51703791653498 >> >> Traceback (most recent call last): >> File >> "/Users/tlinnet/software/disp_spin_speed/test_suite/system_tests/relax_disp.py", >> line 2237, in test_hansen_cpmg_data_missing_auto_analysis >> self.assertAlmostEqual(spin4.pA, 0.818979078699935, 3) >> AssertionError: 0.72076028171472162 != 0.818979078699935 within 3 places >> >> >> test_hansen_cpmg_data_to_lm63 >> Parameter Value (:70) Value (:71) >> R2 (500 MHz) 6.74362296312195 5.00776658003049 >> R2 (800 MHz) 6.57406796119727 6.83345258631709 >> phi_ex 0.31273301474402 0.0553787826054241 >> kex 4723.09898929193 2781.72292639007 >> chi2 363.534044873483 17.0776399916288 >> >> Traceback (most recent call last): >> File >> "/Users/tlinnet/software/disp_spin_speed/test_suite/system_tests/relax_disp.py", >> line 2485, in test_hansen_cpmg_data_to_lm63 >> self.assertAlmostEqual(spin70.r2[r20_key2], 6.57406788826655) >> AssertionError: 6.5740679611972741 != 6.57406788826655 within 7 places >> >> >> relax repository checkout r24044 >> >> svn+ssh://svn.gna.org/svn/relax/branches/disp_spin_speed >> >> Molecular dynamics by NMR data analysis >> >> Copyright (C) 2001-2006 Edward d'Auvergne >> Copyright (C) 2006-2014 the relax development >> team >> >> This is free software which you are welcome to modify and redistribute >> under the conditions of the >> GNU General Public License (GPL). This program, including all modules, is >> licensed under the GPL >> and comes with absolutely no warranty. For details type 'GPL' within the >> relax prompt. >> >> Assistance in using the relax prompt and scripting interface can be >> accessed by typing 'help' within >> the prompt. >> >> Processor fabric: Uni-processor. >> >> >> Hardware information: >> Machine: x86_64 >> Processor: i386 >> Processor name: Intel(R) Core(TM) i5-2435M CPU @ 2.40GHz >> Endianness: little >> Total RAM size: 2048.0 Mb >> Total swap size: 6144.0 Mb >> >> Operating system information: >> System: Darwin >> Release: 13.2.0 >> Version: Darwin Kernel Version 13.2.0: Thu Apr 17 >> 23:03:13 PDT 2014; root:xnu-2422.100.13~1/RELEASE_X86_64 >> Mac version: 10.9.3 (, , ) x86_64 >> Distribution: >> Full platform string: Darwin-13.2.0-x86_64-i386-64bit >> >> Python information: >> Architecture: 64bit >> Python version: 2.7.6 >> Python branch: >> Python build: default, Apr 11 2014 11:55:30 >> Python compiler: GCC 4.2.1 (Apple Inc. build 5666) (dot 3) >> Libc version: >> Python implementation: CPython >> Python revision: >> Python executable: >> /Users/tlinnet/Library/Enthought/Canopy_64bit/User/bin/pythonw >> Python flags: sys.flags(debug=0, py3k_warning=0, >> division_warning=0, division_new=0, inspect=0, interactive=0, optimize=0, >> dont_write_bytecode=0, no_user_site=0, no_site=0, ignore_environment=0, >> tabcheck=0, verbose=0, unicode=0, bytes_warning=0, hash_randomization=0) >> Python float info: sys.float_info(max=1.7976931348623157e+308, >> max_exp=1024, max_10_exp=308, min=2.2250738585072014e-308, min_exp=-1021, >> min_10_exp=-307, dig=15, mant_dig=53, epsilon=2.220446049250313e-16, >> radix=2, rounds=1) >> Python module path: ['/Users/tlinnet/software/disp_spin_speed', >> '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python27.zip', >> '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7', >> '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/plat-darwin', >> '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/plat-mac', >> '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/plat-mac/lib-scriptpackages', >> '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/lib-tk', >> '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/lib-old', >> '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/lib-dynload', >> '/Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages', >> '/Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/PIL', >> '/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/site-packages'] >> >> Python packages and modules (most are optional): >> >> Name Installed Version Path >> minfx True 1.0.7 >> /Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/minfx >> bmrblib True 1.0.3 >> /Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/bmrblib >> numpy True 1.8.0 >> /Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/numpy >> scipy True 0.13.3 >> /Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/scipy >> wxPython True 2.9.2.4 osx-cocoa (classic) >> /Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/wx >> matplotlib True 1.3.1 >> /Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/matplotlib >> mpi4py False >> epydoc True 3.0.1 >> /Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/epydoc >> optparse True 1.5.3 >> /Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/optparse.pyc >> readline True >> /Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/readline.so >> profile True >> /Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/profile.pyc >> bz2 True >> /Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/lib-dynload/bz2.so >> gzip True >> /Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/gzip.pyc >> io True >> /Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/io.pyc >> xml True 0.8.4 (internal) >> /Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/xml/__init__.pyc >> xml.dom.minidom True >> /Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/lib/python2.7/xml/dom/minidom.pyc >> >> relax information: >> Version: repository checkout r24044 >> svn+ssh://svn.gna.org/svn/relax/branches/disp_spin_speed >> Processor fabric: Uni-processor. >> >> relax C modules: >> >> Module Compiled File type >> Path >> target_functions.relax_fit True 2-way ['Mach-O 64-bit bundle >> x86_64', 'Mach-O bundle i386'] >> /Users/tlinnet/software/disp_spin_speed/target_functions/relax_fit.so >> >> >> >> 2014-06-17 17:14 GMT+02:00 Edward d'Auvergne <[email protected]>: >> >>> Sorry, I meant the Relax_disp.test_hansen_cpmg_data_to_lm63_3site >>> system test that was deleted in r24024 in trunk. >>> >>> Cheers, >>> >>> Edward >>> >>> >>> On 17 June 2014 17:13, Edward d'Auvergne <[email protected]> wrote: >>> > Hi Troels, >>> > >>> > Note that after this commit, you must absolutely use the new minfx >>> > 1.0.7 that I just released >>> > (https://gna.org/forum/forum.php?forum_id=2466). All relaxation >>> > dispersion system tests now pass in trunk, including the new >>> > Relax_disp.test_lm63_3site_synthetic test. You should restore the >>> > Relax_disp.test_lm63_3site_synthetic system test you deleted and >>> > adjust the values so that we have better test coverage of the 'LM63 >>> > 3-site' model (http://wiki.nmr-relax.com/LM63_3-site) as mentioned in >>> > http://thread.gmane.org/gmane.science.nmr.relax.scm/21774/focus=6300. >>> > >>> > Regards, >>> > >>> > Edward >>> > >>> > >>> > On 17 June 2014 17:06, <[email protected]> wrote: >>> >> Author: tlinnet >>> >> Date: Tue Jun 17 17:06:56 2014 >>> >> New Revision: 24044 >>> >> >>> >> URL: http://svn.gna.org/viewcvs/relax?rev=24044&view=rev >>> >> Log: >>> >> Merged revisions 24040,24043 via svnmerge from >>> >> svn+ssh://[email protected]/svn/relax/trunk >>> >> >>> >> ........ >>> >> r24040 | bugman | 2014-06-17 15:56:47 +0200 (Tue, 17 Jun 2014) | 9 >>> >> lines >>> >> >>> >> Fixes for all of the relaxation dispersion system tests which were >>> >> failing with the new minfx code. >>> >> >>> >> Due to the tuning of the log barrier constraint algorithm in minfx >>> >> in the commit at >>> >> http://article.gmane.org/gmane.science.mathematics.minfx.scm/25, >>> >> many system tests needed to be >>> >> slightly adjusted. Two of the Relax_disp.test_tp02_data_to_* system >>> >> tests were also failing as the >>> >> optimisation can no longer move out of the minimum at pA = 0.5 for >>> >> one spin (due to the low quality >>> >> grid search in the auto-analysis). >>> >> ........ >>> >> r24043 | bugman | 2014-06-17 17:02:17 +0200 (Tue, 17 Jun 2014) | 3 >>> >> lines >>> >> >>> >> Updated the release checklist document for the new 1.0.7 release of >>> >> minfx. >>> >> ........ >>> >> >>> >> Modified: >>> >> branches/disp_spin_speed/ (props changed) >>> >> branches/disp_spin_speed/docs/Release_Checklist >>> >> branches/disp_spin_speed/test_suite/system_tests/relax_disp.py >>> >> >>> >> [This mail would be too long, it was shortened to contain the URLs >>> >> only.] >>> >> >>> >> Modified: branches/disp_spin_speed/docs/Release_Checklist >>> >> URL: >>> >> http://svn.gna.org/viewcvs/relax/branches/disp_spin_speed/docs/Release_Checklist?rev=24044&r1=24043&r2=24044&view=diff >>> >> >>> >> Modified: >>> >> branches/disp_spin_speed/test_suite/system_tests/relax_disp.py >>> >> URL: >>> >> http://svn.gna.org/viewcvs/relax/branches/disp_spin_speed/test_suite/system_tests/relax_disp.py?rev=24044&r1=24043&r2=24044&view=diff >>> >> >>> >> >>> >> _______________________________________________ >>> >> relax (http://www.nmr-relax.com) >>> >> >>> >> This is the relax-commits mailing list >>> >> [email protected] >>> >> >>> >> To unsubscribe from this list, get a password >>> >> reminder, or change your subscription options, >>> >> visit the list information page at >>> >> https://mail.gna.org/listinfo/relax-commits >>> >>> _______________________________________________ >>> relax (http://www.nmr-relax.com) >>> >>> This is the relax-devel mailing list >>> [email protected] >>> >>> To unsubscribe from this list, get a password >>> reminder, or change your subscription options, >>> visit the list information page at >>> https://mail.gna.org/listinfo/relax-devel >> >> > _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
