Hi all,
I got an error while using the palmer.py script with the 1.2 line of
relax (subversion repository).
The data was recorded at only one field for a protein with no 3D structure.
I first tried to run the three stages one after the other (1, 2, 3) with
no monte carlo simulations (sims=0). It worked fine and I then wanted to
make monte carlo simulations. I put 'sims=500' in the stage 1 and ran
it. It worked fine. I then tried to run the stage 2 and got into this
error :
=======================
relax> nuclei(heteronuc='N')
relax> state.load(file='stage1.save', dir=None)
Opening the file 'stage1.save.bz2' for reading.
Loading all the Modelfree 4 data.
relax> palmer.extract(run='m1', dir=None)
Traceback (most recent call last):
File "/home/semor/packages/relax-1.2/relax", line 454, in ?
Relax()
File "/home/semor/packages/relax-1.2/relax", line 166, in __init__
self.interpreter.run()
File "/home/semor/packages/relax-1.2/prompt/interpreter.py", line 216,
in run
run_script(intro=self.relax.intro_string, local=self.local,
script_file=self.relax.script_file, quit=1)
File "/home/semor/packages/relax-1.2/prompt/interpreter.py", line 391,
in run_script
console.interact(intro, local, script_file, quit)
File "/home/semor/packages/relax-1.2/prompt/interpreter.py", line 343,
in interact_script
execfile(script_file, local)
File "./palmer_2.py", line 129, in ?
exec_stage_2(runs)
File "./palmer_2.py", line 69, in exec_stage_2
palmer.extract(run=name)
File "/home/semor/packages/relax-1.2/prompt/palmer.py", line 263, in
extract
self.__relax__.generic.palmer.extract(run=run, dir=dir)
File "/home/semor/packages/relax-1.2/generic_fns/palmer.py", line 578,
in extract
data.chi2 = float(row[1])
IndexError: list index out of range
=======================
Is this a bug or simply am I doing something wrong ?
Thanks !
Sébastien
_______________________________________________
relax (http://nmr-relax.com)
This is the relax-users mailing list
[email protected]
To unsubscribe from this list, get a password
reminder, or change your subscription options,
visit the list information page at
https://mail.gna.org/listinfo/relax-users
