Hi again, I found out that my problem had been proposed as a bug some months ago...
This is bug 8997. Cheers Séb Sebastien Morin wrote: > Hi all, > > I got an error while using the palmer.py script with the 1.2 line of > relax (subversion repository). > > The data was recorded at only one field for a protein with no 3D structure. > > I first tried to run the three stages one after the other (1, 2, 3) with > no monte carlo simulations (sims=0). It worked fine and I then wanted to > make monte carlo simulations. I put 'sims=500' in the stage 1 and ran > it. It worked fine. I then tried to run the stage 2 and got into this > error : > > ======================= > relax> nuclei(heteronuc='N') > > relax> state.load(file='stage1.save', dir=None) > Opening the file 'stage1.save.bz2' for reading. > > > Loading all the Modelfree 4 data. > > relax> palmer.extract(run='m1', dir=None) > Traceback (most recent call last): > File "/home/semor/packages/relax-1.2/relax", line 454, in ? > Relax() > File "/home/semor/packages/relax-1.2/relax", line 166, in __init__ > self.interpreter.run() > File "/home/semor/packages/relax-1.2/prompt/interpreter.py", line 216, > in run > run_script(intro=self.relax.intro_string, local=self.local, > script_file=self.relax.script_file, quit=1) > File "/home/semor/packages/relax-1.2/prompt/interpreter.py", line 391, > in run_script > console.interact(intro, local, script_file, quit) > File "/home/semor/packages/relax-1.2/prompt/interpreter.py", line 343, > in interact_script > execfile(script_file, local) > File "./palmer_2.py", line 129, in ? > exec_stage_2(runs) > File "./palmer_2.py", line 69, in exec_stage_2 > palmer.extract(run=name) > File "/home/semor/packages/relax-1.2/prompt/palmer.py", line 263, in > extract > self.__relax__.generic.palmer.extract(run=run, dir=dir) > File "/home/semor/packages/relax-1.2/generic_fns/palmer.py", line 578, > in extract > data.chi2 = float(row[1]) > IndexError: list index out of range > ======================= > > Is this a bug or simply am I doing something wrong ? > > Thanks ! > > > Sébastien > > > _______________________________________________ > relax (http://nmr-relax.com) > > This is the relax-users mailing list > [email protected] > > To unsubscribe from this list, get a password > reminder, or change your subscription options, > visit the list information page at > https://mail.gna.org/listinfo/relax-users > > > -- Sebastien Morin Etudiant au PhD en biochimie Laboratoire de resonance magnetique nucleaire Dr Stephane Gagne CREFSIP (Universite Laval, Quebec, CANADA) 1-418-656-2131 #4530 _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
