Hmmm, that's quite strange. Does the 'oblate/init' directory exist while the results file is missing?
Regards, Edward On Wed, Nov 5, 2008 at 9:42 PM, Tyler Reddy <[EMAIL PROTECTED]> wrote: > I just got the same problem with 'oblate', and that folder was removed. > I wonder > if there's a problem with doing this via the NFS mount. Maybe a permissions > thing with directory creation from the python script run on the CPU of another > machine writing results to the mount. > > Tyler > > > > Quoting Edward d'Auvergne <[EMAIL PROTECTED]>: > >> Tyler, >> >> This is an easy one. Just delete the ellipsoid directory! >> >> The problem is that the full_analysis.py scipt is not very robust. >> It's checking for the 'ellipsoid/init' directory to determine which >> round of optimisation it is up to. Maybe it would be an idea to >> modify the script to be more robust to handle the directory existing >> yet the final results file being missing for any round. I would guess >> that relax was killed during its execution, hence the directory exists >> yet the results are missing. I can't do this at the moment but if you >> would like play with some python coding to implement it yourself, the >> changes could be incorporated back into relax for the benefit of all. >> This may not be simple though, so just deleting the offending >> directory will do the trick. >> >> Regards, >> >> Edward >> >> >> On Wed, Nov 5, 2008 at 6:59 PM, Tyler Reddy <[EMAIL PROTECTED]> wrote: >>> Hi, >>> >>> Using the full analysis script, optimization of the 'ellipsoid' >>> model crashes >>> out early with the following output: >>> >>> relax> results.write(file='results', dir='ellipsoid/init/', force=True, >>> compress_type=1) >>> Opening the file 'ellipsoid/init//results.bz2' for writing. >>> RelaxError: Cannot open the file 'ellipsoid/init//results.bz2'. No >>> such file or >>> directory. >>> >>> I'm not sure why it would try to open this directory though. Isn't >>> it odd that >>> there are 2 forward slashes? >>> >>> Tyler >>> >>> >>> _______________________________________________ >>> relax (http://nmr-relax.com) >>> >>> This is the relax-users mailing list >>> [email protected] >>> >>> To unsubscribe from this list, get a password >>> reminder, or change your subscription options, >>> visit the list information page at >>> https://mail.gna.org/listinfo/relax-users >>> >> >> _______________________________________________ >> relax (http://nmr-relax.com) >> >> This is the relax-users mailing list >> [email protected] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-users >> > > > > > _______________________________________________ > relax (http://nmr-relax.com) > > This is the relax-users mailing list > [email protected] > > To unsubscribe from this list, get a password > reminder, or change your subscription options, > visit the list information page at > https://mail.gna.org/listinfo/relax-users > _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
