Yeah it's a permission problem. The same thing happens with XPLOR-NIH writing files to the mount directory. The command:
sudo relax full_analaysis.py does the trick. I'm pretty sure I could also chmod a+w the parent directory or just execute the script as root. Tyler Quoting Edward d'Auvergne <[EMAIL PROTECTED]>: > Hmmm, that's quite strange. Does the 'oblate/init' directory exist > while the results file is missing? > > Regards, > > Edward > > > On Wed, Nov 5, 2008 at 9:42 PM, Tyler Reddy <[EMAIL PROTECTED]> wrote: >> I just got the same problem with 'oblate', and that folder was removed. >> I wonder >> if there's a problem with doing this via the NFS mount. Maybe a permissions >> thing with directory creation from the python script run on the CPU >> of another >> machine writing results to the mount. >> >> Tyler >> >> >> >> Quoting Edward d'Auvergne <[EMAIL PROTECTED]>: >> >>> Tyler, >>> >>> This is an easy one. Just delete the ellipsoid directory! >>> >>> The problem is that the full_analysis.py scipt is not very robust. >>> It's checking for the 'ellipsoid/init' directory to determine which >>> round of optimisation it is up to. Maybe it would be an idea to >>> modify the script to be more robust to handle the directory existing >>> yet the final results file being missing for any round. I would guess >>> that relax was killed during its execution, hence the directory exists >>> yet the results are missing. I can't do this at the moment but if you >>> would like play with some python coding to implement it yourself, the >>> changes could be incorporated back into relax for the benefit of all. >>> This may not be simple though, so just deleting the offending >>> directory will do the trick. >>> >>> Regards, >>> >>> Edward >>> >>> >>> On Wed, Nov 5, 2008 at 6:59 PM, Tyler Reddy <[EMAIL PROTECTED]> wrote: >>>> Hi, >>>> >>>> Using the full analysis script, optimization of the 'ellipsoid' >>>> model crashes >>>> out early with the following output: >>>> >>>> relax> results.write(file='results', dir='ellipsoid/init/', force=True, >>>> compress_type=1) >>>> Opening the file 'ellipsoid/init//results.bz2' for writing. >>>> RelaxError: Cannot open the file 'ellipsoid/init//results.bz2'. No >>>> such file or >>>> directory. >>>> >>>> I'm not sure why it would try to open this directory though. Isn't >>>> it odd that >>>> there are 2 forward slashes? >>>> >>>> Tyler >>>> >>>> >>>> _______________________________________________ >>>> relax (http://nmr-relax.com) >>>> >>>> This is the relax-users mailing list >>>> [email protected] >>>> >>>> To unsubscribe from this list, get a password >>>> reminder, or change your subscription options, >>>> visit the list information page at >>>> https://mail.gna.org/listinfo/relax-users >>>> >>> >>> _______________________________________________ >>> relax (http://nmr-relax.com) >>> >>> This is the relax-users mailing list >>> [email protected] >>> >>> To unsubscribe from this list, get a password >>> reminder, or change your subscription options, >>> visit the list information page at >>> https://mail.gna.org/listinfo/relax-users >>> >> >> >> >> >> _______________________________________________ >> relax (http://nmr-relax.com) >> >> This is the relax-users mailing list >> [email protected] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-users >> > _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
