Thank you Edward and Michael for your help! Indeed installing the profiler package has solved the problem:
"This seems to be a Ubuntu problem, but I could solve it by installing python-profiler. You just have to search for "python-profiler" in your Synaptic Package Manager and let it install the missing package. This should solve the problem! Cheers Michael" Best regards Tiago P -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Edward d'Auvergne Sent: quarta-feira, 2 de Setembro de 2009 18:51 To: Tiago Pais Cc: [email protected] Subject: Re: error message when running Hi, Could you try typing the following in Python: >>> import profile If this fails, then the Python profile module is not installed. This will be located in the libpython2.6-devel or lib64python2.6-devel package which should be installed. Thank you for pointing out this issue, I'll see if I can try to remove this dependency from relax. Regards, Edward 2009/9/2 Tiago Pais <[email protected]>: > Hi, > I am using Ubuntu 9.04 and Python 2.6.2 > "Python 2.6.2 (release26-maint, Apr 19 2009, 01:56:41) > [GCC 4.3.3] on linux2 > Type "help", "copyright", "credits" or "license" for more information." > > Cheers > TP > > -----Original Message----- > From: [email protected] [mailto:[email protected]] On > Behalf Of Edward d'Auvergne > Sent: quarta-feira, 2 de Setembro de 2009 13:19 > To: Tiago Pais > Cc: [email protected] > Subject: Re: error message when running > > Hi, > > This looks like a python version issue, but I need a more information > to be able to tell what is happening. Which version of python are you > using? And which version of Ubuntu? Could you also paste the message > that looks a little like: > > $ python > Python 2.5.2 (r252:60911, Aug 22 2009, 11:43:11) > [GCC 4.2.3 (4.2.3-6mnb1)] on linux2 > Type "help", "copyright", "credits" or "license" for more information. >>>> > > Cheers, > > Edward > > > > 2009/9/2 Tiago Pais <[email protected]>: >> Dear Edward, >> I have now installed the relax 1.3.4 program in a virtual machine running >> Ubuntu but I now I get the following error message: >> >> tp...@tpais-desktop:~$ relax >> Traceback (most recent call last): >> File "/usr/local/bin/relax", line 44, in <module> >> import profile >> ImportError: No module named profile >> tp...@tpais-desktop:~$ >> >> >> Can you help? >> >> Thanks >> TiagoP >> >> >> >> >> -----Original Message----- >> From: [email protected] [mailto:[email protected]] On >> Behalf Of Edward d'Auvergne >> Sent: quarta-feira, 12 de Agosto de 2009 15:07 >> To: Tiago Pais >> Cc: Vic Vostr; [email protected] >> Subject: Re: value.display() >> >> Hi, >> >> Please see below for answers to your questions. >> >> >> On Wed, Aug 12, 2009 at 12:53 PM, Tiago Pais<[email protected]> wrote: >>> Dear Edward, >>> I have some questions relating the functioning of relax 1.3.3: >>> 1- When I initiate the relax command a get an error message about a >> missing >>> DLL (python25.dll). However the program manages to start anf get to the >>> command line. Is this DLL related to the "curve fitting" module? Does the >>> relax program run properly without this DLL >> >> This is a strange error. It is related to Python and not relax, and >> is the main Python library used by all Python programs. Do you have >> Python 2.5 installed? Could you cut and paste the error message? Do >> you get the same message if you run python from the command prompt as >> well? >> >> >>> 2- The "relax --test-suite" routine seems to stall after a while. I have >>> three "F" in the middle of the dotted line. Can this be related to the > DLL >> >> I'm not sure. If you're using Python 2.5 and getting this error, then >> relax should not run. This is strange. >> >> The stalling is likely to be on a system test which takes a while to >> run. It should be finished in 1-3 min though, unless you are using a >> very old machine. I'm currently fixing all the tests on windows in >> the 1.3 repository code, and relax 1.3.4 when released should pass >> most tests (note that 2 unit tests of the float module are know to >> fail). >> >> >>> 3- The "TAB" button is not working within relax >> >> This is a windows only problem as there is no special library called >> 'readline'. If this is too annoying, maybe running this in GNU/Linux >> (in a virtual machine if necessary) would be the easiest way to remove >> this lack of TAB key. >> >> >>> And now some question related to my specific case: >>> 1- What is the nomenclature to describe the C nucleus in a methyl group? > I >>> will have to assume an effective CH vector and not three different ones >> for >>> each proton; how do I tell this to the program? >> >> This is slightly problematic because of all the cross-correlated >> relation rates (interference). There is no theory to handle this, >> that I am aware of. People overcome this by specific labelling so >> that there is one hydrogen and two deuteriums (e.g. see Lewis Kay's >> papers). Not only are the interference effects fatal, but the three >> CH vectors experience different spectral density functions J(w). The >> J(w) are direction dependent, and here you have three different >> directions which constantly change. Again the theory is completely >> missing, as far as I know. What you need is a reference where someone >> has handled the 1H-13C relaxation rates from a CH3 group before! Or >> you'll need to derive the necessary theory. >> >> >>> 2- What is the format for the input R1,R2, and NOE data? Couldn't seem to >>> find it written in the manual. >> >> relax will handle any column formatted file. See the help for the >> relax_data.read() user function in the manual for full details, or >> type: >> >> relax> help(relax_data.read) >> >> >>> Sorry for all these questions but I am just starting dealing with this >>> program. >> >> No problems. If you have any other questions, please don't hesitate to > ask. >> >> Regards, >> >> Edward >> >> >> _______________________________________________ >> relax (http://nmr-relax.com) >> >> This is the relax-users mailing list >> [email protected] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-users >> > > _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
