Hi, Great! In other Linux distributions the profile module comes with the python development packages. Anyway, thanks to your comment I've now made relax independent of this package (it will be in relax-1.3.5 and higher, when they come out):
https://mail.gna.org/public/relax-commits/2009-09/msg00000.html Cheers, Edward 2009/9/3 Tiago Pais <[email protected]>: > Thank you Edward and Michael for your help! > > Indeed installing the profiler package has solved the problem: > > "This seems to be a Ubuntu problem, but I could solve it by installing > python-profiler. You just have to search for "python-profiler" in your > Synaptic Package Manager and let it install the missing package. > > This should solve the problem! > > Cheers > Michael" > > Best regards > Tiago P > > -----Original Message----- > From: [email protected] [mailto:[email protected]] On > Behalf Of Edward d'Auvergne > Sent: quarta-feira, 2 de Setembro de 2009 18:51 > To: Tiago Pais > Cc: [email protected] > Subject: Re: error message when running > > Hi, > > Could you try typing the following in Python: > >>>> import profile > > If this fails, then the Python profile module is not installed. This > will be located in the libpython2.6-devel or lib64python2.6-devel > package which should be installed. Thank you for pointing out this > issue, I'll see if I can try to remove this dependency from relax. > > Regards, > > Edward > > > 2009/9/2 Tiago Pais <[email protected]>: >> Hi, >> I am using Ubuntu 9.04 and Python 2.6.2 >> "Python 2.6.2 (release26-maint, Apr 19 2009, 01:56:41) >> [GCC 4.3.3] on linux2 >> Type "help", "copyright", "credits" or "license" for more information." >> >> Cheers >> TP >> >> -----Original Message----- >> From: [email protected] [mailto:[email protected]] On >> Behalf Of Edward d'Auvergne >> Sent: quarta-feira, 2 de Setembro de 2009 13:19 >> To: Tiago Pais >> Cc: [email protected] >> Subject: Re: error message when running >> >> Hi, >> >> This looks like a python version issue, but I need a more information >> to be able to tell what is happening. Which version of python are you >> using? And which version of Ubuntu? Could you also paste the message >> that looks a little like: >> >> $ python >> Python 2.5.2 (r252:60911, Aug 22 2009, 11:43:11) >> [GCC 4.2.3 (4.2.3-6mnb1)] on linux2 >> Type "help", "copyright", "credits" or "license" for more information. >>>>> >> >> Cheers, >> >> Edward >> >> >> >> 2009/9/2 Tiago Pais <[email protected]>: >>> Dear Edward, >>> I have now installed the relax 1.3.4 program in a virtual machine running >>> Ubuntu but I now I get the following error message: >>> >>> tp...@tpais-desktop:~$ relax >>> Traceback (most recent call last): >>> File "/usr/local/bin/relax", line 44, in <module> >>> import profile >>> ImportError: No module named profile >>> tp...@tpais-desktop:~$ >>> >>> >>> Can you help? >>> >>> Thanks >>> TiagoP >>> >>> >>> >>> >>> -----Original Message----- >>> From: [email protected] [mailto:[email protected]] On >>> Behalf Of Edward d'Auvergne >>> Sent: quarta-feira, 12 de Agosto de 2009 15:07 >>> To: Tiago Pais >>> Cc: Vic Vostr; [email protected] >>> Subject: Re: value.display() >>> >>> Hi, >>> >>> Please see below for answers to your questions. >>> >>> >>> On Wed, Aug 12, 2009 at 12:53 PM, Tiago Pais<[email protected]> wrote: >>>> Dear Edward, >>>> I have some questions relating the functioning of relax 1.3.3: >>>> 1- When I initiate the relax command a get an error message about a >>> missing >>>> DLL (python25.dll). However the program manages to start anf get to the >>>> command line. Is this DLL related to the "curve fitting" module? Does > the >>>> relax program run properly without this DLL >>> >>> This is a strange error. It is related to Python and not relax, and >>> is the main Python library used by all Python programs. Do you have >>> Python 2.5 installed? Could you cut and paste the error message? Do >>> you get the same message if you run python from the command prompt as >>> well? >>> >>> >>>> 2- The "relax --test-suite" routine seems to stall after a while. I have >>>> three "F" in the middle of the dotted line. Can this be related to the >> DLL >>> >>> I'm not sure. If you're using Python 2.5 and getting this error, then >>> relax should not run. This is strange. >>> >>> The stalling is likely to be on a system test which takes a while to >>> run. It should be finished in 1-3 min though, unless you are using a >>> very old machine. I'm currently fixing all the tests on windows in >>> the 1.3 repository code, and relax 1.3.4 when released should pass >>> most tests (note that 2 unit tests of the float module are know to >>> fail). >>> >>> >>>> 3- The "TAB" button is not working within relax >>> >>> This is a windows only problem as there is no special library called >>> 'readline'. If this is too annoying, maybe running this in GNU/Linux >>> (in a virtual machine if necessary) would be the easiest way to remove >>> this lack of TAB key. >>> >>> >>>> And now some question related to my specific case: >>>> 1- What is the nomenclature to describe the C nucleus in a methyl group? >> I >>>> will have to assume an effective CH vector and not three different ones >>> for >>>> each proton; how do I tell this to the program? >>> >>> This is slightly problematic because of all the cross-correlated >>> relation rates (interference). There is no theory to handle this, >>> that I am aware of. People overcome this by specific labelling so >>> that there is one hydrogen and two deuteriums (e.g. see Lewis Kay's >>> papers). Not only are the interference effects fatal, but the three >>> CH vectors experience different spectral density functions J(w). The >>> J(w) are direction dependent, and here you have three different >>> directions which constantly change. Again the theory is completely >>> missing, as far as I know. What you need is a reference where someone >>> has handled the 1H-13C relaxation rates from a CH3 group before! Or >>> you'll need to derive the necessary theory. >>> >>> >>>> 2- What is the format for the input R1,R2, and NOE data? Couldn't seem > to >>>> find it written in the manual. >>> >>> relax will handle any column formatted file. See the help for the >>> relax_data.read() user function in the manual for full details, or >>> type: >>> >>> relax> help(relax_data.read) >>> >>> >>>> Sorry for all these questions but I am just starting dealing with this >>>> program. >>> >>> No problems. If you have any other questions, please don't hesitate to >> ask. >>> >>> Regards, >>> >>> Edward >>> >>> >>> _______________________________________________ >>> relax (http://nmr-relax.com) >>> >>> This is the relax-users mailing list >>> [email protected] >>> >>> To unsubscribe from this list, get a password >>> reminder, or change your subscription options, >>> visit the list information page at >>> https://mail.gna.org/listinfo/relax-users >>> >> >> > > _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
