Hi, Thank you for the information. I've been looking into this problem, but it is hard to diagnose. There has been a bug triggered somewhere in the setup of the data (I think) but as this is running in a thread, the relax error message is not being caught and reported. That is the meaning of "Unhandled exception in thread". So the real cause is lost. There is a way of bypassing this by using the debug flag. I.e. running relax as:
$ relax -g --debug This will cause the real source of the error to be printed in the terminal/shell in which you launched relax. It would be very useful if you were to report this in a bug report though, including a tiny, randomised data set which still triggers the bug (https://gna.org/bugs/?func=additem&group=relax). Having the data will allow me to very quickly reproduce the bug and hopefully have a fix within ~5 min. Cheers, Edward On 27 June 2011 10:39, Aldino <[email protected]> wrote: > Dear Edward, > > once again, thank you for your reply. This time I´ll make sure the message > goes to the mailing list. > So, here it goes: > > I am using the latest Relax version (3.1.10) > > Below I send the relax info (also in attach): > > relax 1.3.10 > > Molecular dynamics by NMR data analysis > > Copyright (C) 2001-2006 Edward d'Auvergne > Copyright (C) 2006-2011 the relax development team > > This is free software which you are welcome to modify and redistribute under > the conditions of the > GNU General Public License (GPL). This program, including all modules, is > licensed under the GPL > and comes with absolutely no warranty. For details type 'GPL' within the > relax prompt. > > Assistance in using the relax prompt and scripting interface can be accessed > by typing 'help' within > the prompt. > > Hardware information: > Machine: i686 > Processor: i686 > > System information: > System: Linux > Release: 2.6.38-8-generic > Version: #42-Ubuntu SMP Mon Apr 11 03:31:50 UTC 2011 > GNU/Linux version: Ubuntu 11.04 natty > Distribution: Ubuntu 11.04 natty > Full platform string: > Linux-2.6.38-8-generic-i686-with-Ubuntu-11.04-natty > > Software information: > Architecture: 32bit ELF > Python version: 2.7.1+ > Python branch: tags/r271 > Python build: r271:86832, Apr 11 2011 18:05:24 > Python compiler: GCC 4.5.2 > Python implementation: CPython > Python revision: 86832 > Numpy version: 1.5.1 > Libc version: glibc 2.4 > > Python packages (most are optional): > > Package Installed Version Path > minfx True Unknown > /home/aldino/Software/relax-1.3.10/minfx > bmrblib False > numpy True 1.5.1 > /usr/lib/pymodules/python2.7/numpy > ScientificPython True 2.8 > /usr/lib/python2.7/dist-packages/Scientific > wxPython True > mpi4py False > epydoc False > optparse True 1.5.3 > /usr/lib/python2.7/optparse.pyc > Numeric False > readline True > /usr/lib/python2.7/lib-dynload/readline.so > profile True > /usr/lib/python2.7/profile.pyc > bz2 True > /usr/lib/python2.7/lib-dynload/bz2.so > gzip True > /usr/lib/python2.7/gzip.pyc > os.devnull True > /usr/lib/python2.7/os.pyc > > Compiled relax C modules: > Relaxation curve fitting: True > > > In the mean wile I will try to submit a bug report for this. > > Thanks, > Aldino > > -----Mensagem Original----- From: Edward d'Auvergne > Sent: Wednesday, June 22, 2011 3:35 PM > To: Aldino > Cc: [email protected] > Subject: Re: R1 and R2 calculation error > > Dear Aldino, > > Welcome to the relax mailing lists. The problem you are seeing could > possibly be related to an older version of relax. Which version are > you using? Could you copy and paste the output of: > > $ relax --info > > If you are using version 1.3.9 or earlier, I would recommend trying > out 1.3.10 and see if the problem is solved. If you are using version > 1.3.10, you have encountered a new bug. If so, would you be able to > submit a bug report for this? See > https://gna.org/bugs/?func=additem&group=relax. I would recommend > including a minimal data set (only data for one or two spins, > randomised if you would like to keep it private) and instructions for > how to trigger the bug. > > Cheers, > > Edward > > > > On 21 June 2011 18:05, Aldino <[email protected]> wrote: >> >> Hi! >> >> I have just started using RelaxGUI and I’m having some problems when >> trying >> to calculate R1 and R2. >> >> For the steady-state NOE everything is alright but when I start the R1 >> calculation I get: >> >> >> >> “Starting R1 calculation >> >> Unhandled exception in thread started by <bound method >> Auto_r1.execute_thread of <gui.analyses.auto_r1.Auto_r1 instance at >> 0xa47556c>>” >> >> >> >> The same thing when trying to calculate R2... >> >> >> >> “Starting R2 calculation >> >> Unhandled exception in thread started by <bound method >> Auto_r2.execute_thread of <gui.analyses.auto_r2.Auto_r2 instance at >> 0xa46f4cc>>” >> >> >> >> Please help... >> Thanks, >> Aldino >> >> >> >> ______________________________________________ >> Aldino Viegas, PhD Student >> Dep. Química, REQUIMTE >> Faculdade de Ciências e Tecnologia >> Universidade Nova de Lisboa >> 2829-516 Caparica, Portugal >> >> Tlf. +351 212948300 >> Ext. 10900 Lab. 106-A >> [email protected] >> _______________________________________________ >> relax (http://nmr-relax.com) >> >> This is the relax-users mailing list >> [email protected] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-users >> >> > _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
