Dear Aldino, Thank you for the bug report and data, this will definitely help with the debugging (well, without it I couldn't start debugging). I'm currently working on a special branch where I am redesigning the GUI completely for solving many bugs in the GUI. This might take a while to complete though, and the code is not very stable for now. I will see if this bug is solvable with a simple fix, or if there are fundamental design issues that can only be resolved with the new design. Hopefully I'll have some good news soon.
Cheers, Edward On 1 July 2011 12:49, Aldino <[email protected]> wrote: > Dear Edward, > hello again! > > I have already manage to submit a bug report with the respective attached > files (https://gna.org/support/index.php?2764) > > Looking forward for a resolution! > > Cheers, > Aldino > > -----Mensagem Original----- From: Aldino > Sent: Friday, July 01, 2011 10:47 AM > To: Edward d'Auvergne > Subject: Re: R1 and R2 calculation error > > Dear Edward, > sorry for no having posted the bug report yet but I'm having some problems > with the GNA account... > Because de confirmation mail went to the Spam, I haven't confirmed, so they > deleted it... > Now I have created a new one! > > In the mean wile the most I can do, if you think it appropriate, is send you > (or to the Relax mailling list) the representative files in attch. > > Best regards, > Aldino > > > -----Mensagem Original----- From: Edward d'Auvergne > Sent: Monday, June 27, 2011 10:08 AM > To: Aldino > Cc: [email protected] > Subject: Re: R1 and R2 calculation error > > Hi, > > Thank you for the information. I've been looking into this problem, > but it is hard to diagnose. There has been a bug triggered somewhere > in the setup of the data (I think) but as this is running in a thread, > the relax error message is not being caught and reported. That is the > meaning of "Unhandled exception in thread". So the real cause is > lost. There is a way of bypassing this by using the debug flag. I.e. > running relax as: > > $ relax -g --debug > > This will cause the real source of the error to be printed in the > terminal/shell in which you launched relax. It would be very useful > if you were to report this in a bug report though, including a tiny, > randomised data set which still triggers the bug > (https://gna.org/bugs/?func=additem&group=relax). Having the data > will allow me to very quickly reproduce the bug and hopefully have a > fix within ~5 min. > > Cheers, > > Edward > > > > On 27 June 2011 10:39, Aldino <[email protected]> wrote: >> >> Dear Edward, >> >> once again, thank you for your reply. This time I´ll make sure the message >> goes to the mailing list. >> So, here it goes: >> >> I am using the latest Relax version (3.1.10) >> >> Below I send the relax info (also in attach): >> >> relax 1.3.10 >> >> Molecular dynamics by NMR data analysis >> >> Copyright (C) 2001-2006 Edward d'Auvergne >> Copyright (C) 2006-2011 the relax development team >> >> This is free software which you are welcome to modify and redistribute >> under >> the conditions of the >> GNU General Public License (GPL). This program, including all modules, is >> licensed under the GPL >> and comes with absolutely no warranty. For details type 'GPL' within the >> relax prompt. >> >> Assistance in using the relax prompt and scripting interface can be >> accessed >> by typing 'help' within >> the prompt. >> >> Hardware information: >> Machine: i686 >> Processor: i686 >> >> System information: >> System: Linux >> Release: 2.6.38-8-generic >> Version: #42-Ubuntu SMP Mon Apr 11 03:31:50 UTC 2011 >> GNU/Linux version: Ubuntu 11.04 natty >> Distribution: Ubuntu 11.04 natty >> Full platform string: >> Linux-2.6.38-8-generic-i686-with-Ubuntu-11.04-natty >> >> Software information: >> Architecture: 32bit ELF >> Python version: 2.7.1+ >> Python branch: tags/r271 >> Python build: r271:86832, Apr 11 2011 18:05:24 >> Python compiler: GCC 4.5.2 >> Python implementation: CPython >> Python revision: 86832 >> Numpy version: 1.5.1 >> Libc version: glibc 2.4 >> >> Python packages (most are optional): >> >> Package Installed Version Path >> minfx True Unknown >> /home/aldino/Software/relax-1.3.10/minfx >> bmrblib False >> numpy True 1.5.1 >> /usr/lib/pymodules/python2.7/numpy >> ScientificPython True 2.8 >> /usr/lib/python2.7/dist-packages/Scientific >> wxPython True >> mpi4py False >> epydoc False >> optparse True 1.5.3 >> /usr/lib/python2.7/optparse.pyc >> Numeric False >> readline True >> /usr/lib/python2.7/lib-dynload/readline.so >> profile True >> /usr/lib/python2.7/profile.pyc >> bz2 True >> /usr/lib/python2.7/lib-dynload/bz2.so >> gzip True >> /usr/lib/python2.7/gzip.pyc >> os.devnull True >> /usr/lib/python2.7/os.pyc >> >> Compiled relax C modules: >> Relaxation curve fitting: True >> >> >> In the mean wile I will try to submit a bug report for this. >> >> Thanks, >> Aldino >> >> -----Mensagem Original----- From: Edward d'Auvergne >> Sent: Wednesday, June 22, 2011 3:35 PM >> To: Aldino >> Cc: [email protected] >> Subject: Re: R1 and R2 calculation error >> >> Dear Aldino, >> >> Welcome to the relax mailing lists. The problem you are seeing could >> possibly be related to an older version of relax. Which version are >> you using? Could you copy and paste the output of: >> >> $ relax --info >> >> If you are using version 1.3.9 or earlier, I would recommend trying >> out 1.3.10 and see if the problem is solved. If you are using version >> 1.3.10, you have encountered a new bug. If so, would you be able to >> submit a bug report for this? See >> https://gna.org/bugs/?func=additem&group=relax. I would recommend >> including a minimal data set (only data for one or two spins, >> randomised if you would like to keep it private) and instructions for >> how to trigger the bug. >> >> Cheers, >> >> Edward >> >> >> >> On 21 June 2011 18:05, Aldino <[email protected]> wrote: >>> >>> Hi! >>> >>> I have just started using RelaxGUI and I’m having some problems when >>> trying >>> to calculate R1 and R2. >>> >>> For the steady-state NOE everything is alright but when I start the R1 >>> calculation I get: >>> >>> >>> >>> “Starting R1 calculation >>> >>> Unhandled exception in thread started by <bound method >>> Auto_r1.execute_thread of <gui.analyses.auto_r1.Auto_r1 instance at >>> 0xa47556c>>” >>> >>> >>> >>> The same thing when trying to calculate R2... >>> >>> >>> >>> “Starting R2 calculation >>> >>> Unhandled exception in thread started by <bound method >>> Auto_r2.execute_thread of <gui.analyses.auto_r2.Auto_r2 instance at >>> 0xa46f4cc>>” >>> >>> >>> >>> Please help... >>> Thanks, >>> Aldino >>> >>> >>> >>> ______________________________________________ >>> Aldino Viegas, PhD Student >>> Dep. Química, REQUIMTE >>> Faculdade de Ciências e Tecnologia >>> Universidade Nova de Lisboa >>> 2829-516 Caparica, Portugal >>> >>> Tlf. +351 212948300 >>> Ext. 10900 Lab. 106-A >>> [email protected] >>> _______________________________________________ >>> relax (http://nmr-relax.com) >>> >>> This is the relax-users mailing list >>> [email protected] >>> >>> To unsubscribe from this list, get a password >>> reminder, or change your subscription options, >>> visit the list information page at >>> https://mail.gna.org/listinfo/relax-users >>> >>> >> > _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
