Hi Petr,
Welcome to the relax mailing lists! For your problem, what does relax
say if you run the analysis with missing residues? Could you copy and
paste the full output? Cheers. We have written the software to
specifically handle this situation, and this should be automatic. For
the relax developers reading this, for reference you can see this as
the "missing" argument for the target function __init__() setup method
at:
http://www.nmr-relax.com/api/4.0/target_functions.relax_disp-pysrc.html#Dispersion.__init__
If you see an error message, then this is a bug. relax is designed to
handle every situation automatically - you should never, ever have to
revert to such tricks to get relax to work. If you do see an error,
it would be appreciated if you could create a bug report about the
problem at:
https://gna.org/bugs/?func=additem&group=relax
Ideally, if you could attach a script and truncated data files (with
maximally 2-3 residues, slightly randomised, if you wish), that would
be appreciated. If the problem can be quickly reproduced with the
attached files, then I can convert that in to a relax system test. I
normally then only need 5-10 minutes to eliminate such a bug.
Cheers,
Edward
On 22 April 2016 at 14:18, Petr Padrta <pad...@ncbr.muni.cz> wrote:
> Hello everybody,
>
> I'm analysing some CPMG data with the auto-analysis script
> (sample_scripts/relax_disp/cpmg_analysis.py). Problem is that I don't have the
> same set of spectra for all my residues, i.e. there are missing residues in
> some of the peak lists and relax doesn't like that. So far I bypass the
> problem
> by generating residue-specific peak lists and running the analyses separately
> for individual residues but that's 1) tedious and 2) I'm unable to run
> clustered analysis unless I shave the spectra list to "common denominator". I
> also tried setting the missing intensities to "None" or to "NA" but that's not
> working. Any ideas?
>
> ----------------------------------------------------------------------
>
> Petr Padrta
>
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