Github user MechCoder commented on the pull request:

    https://github.com/apache/spark/pull/5946#issuecomment-104125371
  
    @jkbradley I tested it with a number of situations using this script, but 
surprisingly there is no improvement by replacing the number of indices and 
values.
    
        from pyspark.mllib.linalg import SparseVector
        import numpy as np
        from time import time
        rng = np.random.RandomState(0)
        ind1 = np.sort(rng.choice(5000000, 500000, replace=False))
        ind2 = np.sort(rng.choice(5000000, 5000, replace=False))
        val1 = rng.rand(500000)
        val2 = rng.rand(5000)
    
        v = SparseVector(5000000, ind1, val1)
        v1 = SparseVector(5000000, ind2, val2)
        t = time()
    
        t_ = 0.0
        for i in xrange(10):
            t = time()
            tmp = v.dot(v1)
            t_ += time() - t
    
        print t_
        t_ = 0.0
    
        for i in xrange(10):
            t = time()
            tmp = v.dot1(v1)
            t_ += time() - t
    
        print t_
    
        t_ = 0.0
        for i in xrange(10):
            t = time()
            tmp = v.squared_distance(v1)
            t_ += time() - t
    
        print t_
        t_ = 0.0
    
        for i in xrange(10):
            t = time()
            tmp = v.squared_distance1(v1)
            t_ += time() - t
    
        print t_


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